{"id":2111,"date":"2024-08-25T20:29:49","date_gmt":"2024-08-25T20:29:49","guid":{"rendered":"https:\/\/labs.cs.queensu.ca\/perklab\/?post_type=qsc_member&#038;p=2111"},"modified":"2024-08-25T20:29:50","modified_gmt":"2024-08-25T20:29:50","slug":"andras-lasso","status":"publish","type":"qsc_member","link":"https:\/\/labs.cs.queensu.ca\/perklab\/members\/andras-lasso\/","title":{"rendered":"Andras\u00a0Lasso"},"content":{"rendered":"<div class=\"wp-block-columns is-layout-flex wp-block-columns-is-layout-flex qsc-member-single-core-info-container\">\n\t<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow qsc-member-single-photo-column\">\n\t\t<img loading=\"lazy\" decoding=\"async\" width=\"187\" height=\"250\" src=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2023\/11\/AndrasLasso2014.jpg\" class=\"qsc-member-single-photo wp-post-image\" alt=\"\" srcset=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2023\/11\/AndrasLasso2014.jpg 359w, https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2023\/11\/AndrasLasso2014-224x300.jpg 224w\" sizes=\"auto, (max-width: 187px) 100vw, 187px\" \/>\n\t<\/div>\n\t<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow qsc-member-single-info-column\">\n\t\t<div class=\"qsc-member-name\"><h1>Andras\u00a0Lasso<\/h1><\/div>\n\t\t<div class=\"qsc-member-position\">Senior Researcher<\/div>\n\t\t<div class=\"qsc-member-department\">School of Computing<\/div>\n\t\t<div class=\"qsc-member-organization\">Queen&#8217;s University<\/div>\n\t\t<div class=\"qsc-member-contact\">\n\t\t\t<div class=\"qsc-member-email\"><a href=\"mailto:lasso@queensu.ca\">lasso@queensu.ca<\/a><\/div>\n\t\t\t<div class=\"qsc-member-socials\">\n\t\t\t<a href=\"https:\/\/www.linkedin.com\/in\/andraslasso\/\" title=\"LinkedIn\"><i class=\"fa-brands fa-linkedin\"><\/i><\/a>\n\t\t\t<a href=\"https:\/\/scholar.google.com\/citations?hl=en&amp;user=vEXNR7sAAAAJ\" title=\"Google Scholar\"><i class=\"fa-brands fa-google-scholar\"><\/i><\/a>\n\t\t\t<a href=\"https:\/\/www.researchgate.net\/profile\/Andras-Lasso\" title=\"ResearchGate\"><i class=\"fa-brands fa-researchgate\"><\/i><\/a>\n\t\t\t<a href=\"https:\/\/github.com\/lassoan\" title=\"GitHub\"><i class=\"fa-brands fa-github\"><\/i><\/a>\n\t\t\t<a href=\"https:\/\/twitter.com\/lassoan\" title=\"Personal Website\"><i class=\"fa-solid fa-link\"><\/i><\/a>\n\t\t\t<\/div>\n\t\t<\/div>\n\t<\/div>\n<\/div>\n<div class=\"qsc-member-bio\">\n\t\n<h2 class=\"wp-block-heading\">Biography<\/h2>\n\n\n\n<p>Andras Lasso graduated at the Budapest University of Technology, Hungary (MSc in Electrical Engineering, 2000; PhD, 2011). He joined GE Healthcare as a software engineer in 2000, was appointed Lead Engineer in 2003, and Senior Engineer in 2008. He developed various software components and test infrastructure\u00a0for GE Innova interventional X-ray systems and GE Advantage Workstation and led development of advanced image visualization, quantification, real-time image fusion and guidance applications. He also participated in various research collaboration projects in medical image analysis, enhancement, segmentation, registration, and fusion. He joined the Perk Lab in 2009 as a Senior Engineer to work on image-guided intervention research and system development. In 2011 he was appointed to be Associate Director of the Perk Lab. His main interests are developing\u00a0high-quality, reusable, open-source\u00a0software components\u00a0and using them to\u00a0build systems for translational research and clinical use.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Publications<\/h2>\n\n\n<div class=\"teachpress_pub_list\"><form name=\"tppublistform\" method=\"get\"><a name=\"tppubs\" id=\"tppubs\"><\/a><\/form><div class=\"tablenav\"><div class=\"tablenav-pages\"><span class=\"displaying-num\">264 entries<\/span> <a class=\"page-numbers button disabled\">&laquo;<\/a> <a class=\"page-numbers button disabled\">&lsaquo;<\/a> 1 of 6 <a href=\"https:\/\/labs.cs.queensu.ca\/perklab\/members\/andras-lasso\/?limit=2&amp;tgid=&amp;yr=&amp;type=&amp;usr=&amp;auth=&amp;tsr=#tppubs\" title=\"next page\" class=\"page-numbers button\">&rsaquo;<\/a> <a href=\"https:\/\/labs.cs.queensu.ca\/perklab\/members\/andras-lasso\/?limit=6&amp;tgid=&amp;yr=&amp;type=&amp;usr=&amp;auth=&amp;tsr=#tppubs\" title=\"last page\" class=\"page-numbers button\">&raquo;<\/a> <\/div><\/div><div class=\"teachpress_publication_list\"><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Bumm, Rudolf;  Zaffino, Paolo;  Lasso, Andras;  Est\u00e9par, Ra\u00fal San Jos\u00e9;  Pieper, Steven;  Wasserthal, Jakob;  Spadea, Maria Francesca;  Latshang, Tsogyal;  Kawel-Boehm, Nadine;  W\u00e4ckerlin, Adrian;  Werner, Raphael;  H\u00e4ssig, Gabriela;  Furrer, Markus;  Kikinis, Ron<\/p><p class=\"tp_pub_title\">Artificial intelligence (AI)-assisted chest computer tomography (CT) insights: a study on intensive care unit (ICU) admittance trends in 78 coronavirus disease 2019 (COVID-19 \u2026 <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Journal of Thoracic Disease, <\/span><span class=\"tp_pub_additional_volume\">vol. 16, <\/span><span class=\"tp_pub_additional_number\">no. 2, <\/span><span class=\"tp_pub_additional_year\">2024<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_1139\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('1139','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_1139\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('1139','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_1139\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{bumm2024,<br \/>\r\ntitle = {Artificial intelligence (AI)-assisted chest computer tomography (CT) insights: a study on intensive care unit (ICU) admittance trends in 78 coronavirus disease 2019 (COVID-19 \u2026},<br \/>\r\nauthor = {Rudolf Bumm and Paolo Zaffino and Andras Lasso and Ra\u00fal San Jos\u00e9 Est\u00e9par and Steven Pieper and Jakob Wasserthal and Maria Francesca Spadea and Tsogyal Latshang and Nadine Kawel-Boehm and Adrian W\u00e4ckerlin and Raphael Werner and Gabriela H\u00e4ssig and Markus Furrer and Ron Kikinis},<br \/>\r\nyear  = {2024},<br \/>\r\ndate = {2024-01-01},<br \/>\r\njournal = {Journal of Thoracic Disease},<br \/>\r\nvolume = {16},<br \/>\r\nnumber = {2},<br \/>\r\npublisher = {AME Publishing Company},<br \/>\r\nabstract = {Background: The global coronavirus disease 2019 (COVID-19) pandemic has posed substantial challenges for healthcare systems, notably the increased demand for chest computed tomography (CT) scans, which lack automated analysis. Our study addresses this by utilizing artificial intelligence-supported automated computer analysis to investigate lung involvement distribution and extent in COVID-19 patients. Additionally, we explore the association between lung involvement and intensive care unit (ICU) admission, while also comparing computer analysis performance with expert radiologists\u2019 assessments.},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('1139','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_1139\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Background: The global coronavirus disease 2019 (COVID-19) pandemic has posed substantial challenges for healthcare systems, notably the increased demand for chest computed tomography (CT) scans, which lack automated analysis. Our study addresses this by utilizing artificial intelligence-supported automated computer analysis to investigate lung involvement distribution and extent in COVID-19 patients. Additionally, we explore the association between lung involvement and intensive care unit (ICU) admission, while also comparing computer analysis performance with expert radiologists\u2019 assessments.<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('1139','tp_abstract')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Herz, Christian;  Vergnet, Nicolas;  Tian, Sijie;  Aly, Abdullah H;  Jolley, Matthew A;  Tran, Nathanael;  Arenas, Gabriel;  Lasso, Andras;  Schwartz, Nadav;  O\u2019Neill, Kathleen E;  Yushkevich, Paul A;  Pouch, Alison M<\/p><p class=\"tp_pub_title\">Open-source graphical user interface for the creation of synthetic skeletons for medical image analysis <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Journal of Medical Imaging, <\/span><span class=\"tp_pub_additional_volume\">vol. 11, <\/span><span class=\"tp_pub_additional_number\">no. 3, <\/span><span class=\"tp_pub_additional_pages\">pp. 036001-036001, <\/span><span class=\"tp_pub_additional_year\">2024<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_1138\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('1138','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_1138\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('1138','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_1138\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{herz2024,<br \/>\r\ntitle = {Open-source graphical user interface for the creation of synthetic skeletons for medical image analysis},<br \/>\r\nauthor = {Christian Herz and Nicolas Vergnet and Sijie Tian and Abdullah H Aly and Matthew A Jolley and Nathanael Tran and Gabriel Arenas and Andras Lasso and Nadav Schwartz and Kathleen E O\u2019Neill and Paul A Yushkevich and Alison M Pouch},<br \/>\r\nyear  = {2024},<br \/>\r\ndate = {2024-01-01},<br \/>\r\njournal = {Journal of Medical Imaging},<br \/>\r\nvolume = {11},<br \/>\r\nnumber = {3},<br \/>\r\npages = {036001-036001},<br \/>\r\npublisher = {Society of Photo-Optical Instrumentation Engineers},<br \/>\r\nabstract = {Purpose <br \/>\r\nDeformable medial modeling is an inverse skeletonization approach to representing anatomy in medical images, which can be used for statistical shape analysis and assessment of patient-specific anatomical features such as locally varying thickness. It involves deforming a pre-defined synthetic skeleton, or template, to anatomical structures of the same class. The lack of software for creating such skeletons has been a limitation to more widespread use of deformable medial modeling. Therefore, the objective of this work is to present an open-source user interface (UI) for the creation of synthetic skeletons for a range of medial modeling applications in medical imaging. <br \/>\r\nApproach <br \/>\r\nA UI for interactive design of synthetic skeletons was implemented in 3D Slicer, an open-source medical image analysis application. The steps in synthetic skeleton design include importation and skeletonization of a 3D \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('1138','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_1138\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Purpose <br \/>\r\nDeformable medial modeling is an inverse skeletonization approach to representing anatomy in medical images, which can be used for statistical shape analysis and assessment of patient-specific anatomical features such as locally varying thickness. It involves deforming a pre-defined synthetic skeleton, or template, to anatomical structures of the same class. The lack of software for creating such skeletons has been a limitation to more widespread use of deformable medial modeling. Therefore, the objective of this work is to present an open-source user interface (UI) for the creation of synthetic skeletons for a range of medial modeling applications in medical imaging. <br \/>\r\nApproach <br \/>\r\nA UI for interactive design of synthetic skeletons was implemented in 3D Slicer, an open-source medical image analysis application. The steps in synthetic skeleton design include importation and skeletonization of a 3D \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('1138','tp_abstract')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> d'Albenzio, Gabriella;  Hisey, Rebecca;  Srikanthan, Dilakshan;  Ungi, Tamas;  Lasso, Andras;  Aghayan, Davit;  Fichtinger, Gabor;  Palomar, Rafael<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/12927\/129270Z\/Using-NURBS-for-virtual-resections-in-liver-surgery-planning\/10.1117\/12.3006486.short\" title=\"https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/12927\/129270Z\/Using-NURBS-for-virtual-resections-in-liver-surgery-planning\/10.1117\/12.3006486.short\" target=\"blank\">Using NURBS for virtual resections in liver surgery planning: a comparative usability study<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_volume\">vol. 12927, <\/span><span class=\"tp_pub_additional_pages\">pp. 235-241, <\/span><span class=\"tp_pub_additional_year\">2024<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_988\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('988','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_988\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('988','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_988\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('988','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_988\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2024f,<br \/>\r\ntitle = {Using NURBS for virtual resections in liver surgery planning: a comparative usability study},<br \/>\r\nauthor = {Gabriella d'Albenzio and Rebecca Hisey and Dilakshan Srikanthan and Tamas Ungi and Andras Lasso and Davit Aghayan and Gabor Fichtinger and Rafael Palomar},<br \/>\r\nurl = {https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/12927\/129270Z\/Using-NURBS-for-virtual-resections-in-liver-surgery-planning\/10.1117\/12.3006486.short},<br \/>\r\nyear  = {2024},<br \/>\r\ndate = {2024-01-01},<br \/>\r\nvolume = {12927},<br \/>\r\npages = {235-241},<br \/>\r\npublisher = {SPIE},<br \/>\r\nabstract = {PURPOSE <br \/>\r\nAccurate preoperative planning is crucial for liver resection surgery due to the complex anatomical structures and variations among patients. The need of virtual resections utilizing deformable surfaces presents a promising approach for effective liver surgery planning. However, the range of available surface definitions poses the question of which definition is most appropriate. <br \/>\r\nMETHODS <br \/>\r\nThe study compares the use of NURBS and B\u00b4ezier surfaces for the definition of virtual resections through a usability study, where 25 participants (19 biomedical researchers and 6 liver surgeons) completed tasks using varying numbers of control points driving surface deformations and different surface types. Specifically, participants aim to perform virtual liver resections using 16 and 9 control points for NURBS and B\u00b4ezier surfaces. The goal is to assess whether they can attain an optimal resection plan, effectively \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('988','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_988\" style=\"display:none;\"><div class=\"tp_abstract_entry\">PURPOSE <br \/>\r\nAccurate preoperative planning is crucial for liver resection surgery due to the complex anatomical structures and variations among patients. The need of virtual resections utilizing deformable surfaces presents a promising approach for effective liver surgery planning. However, the range of available surface definitions poses the question of which definition is most appropriate. <br \/>\r\nMETHODS <br \/>\r\nThe study compares the use of NURBS and B\u00b4ezier surfaces for the definition of virtual resections through a usability study, where 25 participants (19 biomedical researchers and 6 liver surgeons) completed tasks using varying numbers of control points driving surface deformations and different surface types. Specifically, participants aim to perform virtual liver resections using 16 and 9 control points for NURBS and B\u00b4ezier surfaces. The goal is to assess whether they can attain an optimal resection plan, effectively \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('988','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_988\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/12927\/129270Z\/Using-NURBS-for-virtual-resections-in-liver-surgery-planning\/10.1117\/12.3006486.short\" title=\"https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/12927\/129270Z\/[...]\" target=\"_blank\">https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/12927\/129270Z\/[...]<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('988','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Simpson, Amber L;  Peoples, Jacob;  Creasy, John M;  Fichtinger, Gabor;  Gangai, Natalie;  Keshavamurthy, Krishna N;  Lasso, Andras;  Shia, Jinru;  D\u2019Angelica, Michael I;  Do, Richard KG<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/www.nature.com\/articles\/s41597-024-02981-2\" title=\"https:\/\/www.nature.com\/articles\/s41597-024-02981-2\" target=\"blank\">Preoperative CT and survival data for patients undergoing resection of colorectal liver metastases<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Scientific Data, <\/span><span class=\"tp_pub_additional_volume\">vol. 11, <\/span><span class=\"tp_pub_additional_issue\">iss. 1, <\/span><span class=\"tp_pub_additional_pages\">pp. 172, <\/span><span class=\"tp_pub_additional_year\">2024<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_935\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('935','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_935\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('935','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_935\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('935','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_935\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2024,<br \/>\r\ntitle = {Preoperative CT and survival data for patients undergoing resection of colorectal liver metastases},<br \/>\r\nauthor = {Amber L Simpson and Jacob Peoples and John M Creasy and Gabor Fichtinger and Natalie Gangai and Krishna N Keshavamurthy and Andras Lasso and Jinru Shia and Michael I D\u2019Angelica and Richard KG Do},<br \/>\r\nurl = {https:\/\/www.nature.com\/articles\/s41597-024-02981-2},<br \/>\r\nyear  = {2024},<br \/>\r\ndate = {2024-01-01},<br \/>\r\njournal = {Scientific Data},<br \/>\r\nvolume = {11},<br \/>\r\nissue = {1},<br \/>\r\npages = {172},<br \/>\r\npublisher = {Nature Publishing Group UK},<br \/>\r\nabstract = {The liver is a common site for the development of metastases in colorectal cancer. Treatment selection for patients with colorectal liver metastases (CRLM) is difficult; although hepatic resection will cure a minority of CRLM patients, recurrence is common. Reliable preoperative prediction of recurrence could therefore be a valuable tool for physicians in selecting the best candidates for hepatic resection in the treatment of CRLM. It has been hypothesized that evidence for recurrence could be found via quantitative image analysis on preoperative CT imaging of the future liver remnant before resection. To investigate this hypothesis, we have collected preoperative hepatic CT scans, clinicopathologic data, and recurrence\/survival data, from a large, single-institution series of patients (n\u2009=\u2009197) who underwent hepatic resection of CRLM. For each patient, we also created segmentations of the liver, vessels, tumors, and \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('935','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_935\" style=\"display:none;\"><div class=\"tp_abstract_entry\">The liver is a common site for the development of metastases in colorectal cancer. Treatment selection for patients with colorectal liver metastases (CRLM) is difficult; although hepatic resection will cure a minority of CRLM patients, recurrence is common. Reliable preoperative prediction of recurrence could therefore be a valuable tool for physicians in selecting the best candidates for hepatic resection in the treatment of CRLM. It has been hypothesized that evidence for recurrence could be found via quantitative image analysis on preoperative CT imaging of the future liver remnant before resection. To investigate this hypothesis, we have collected preoperative hepatic CT scans, clinicopathologic data, and recurrence\/survival data, from a large, single-institution series of patients (n\u2009=\u2009197) who underwent hepatic resection of CRLM. For each patient, we also created segmentations of the liver, vessels, tumors, and \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('935','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_935\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/www.nature.com\/articles\/s41597-024-02981-2\" title=\"https:\/\/www.nature.com\/articles\/s41597-024-02981-2\" target=\"_blank\">https:\/\/www.nature.com\/articles\/s41597-024-02981-2<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('935','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Amin, Silvani;  Dewey, Hannah;  Lasso, Andras;  Sabin, Patricia;  Han, Ye;  Vicory, Jared;  Paniagua, Beatriz;  Herz, Christian;  Nam, Hannah;  Cianciulli, Alana;  Flynn, Maura;  Laurence, Devin W;  Harrild, David;  Fichtinger, Gabor;  Cohen, Meryl S;  Jolley, Matthew A<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0894731723005941\" title=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0894731723005941\" target=\"blank\">Euclidean and shape-based analysis of the dynamic mitral annulus in children using a novel open-source framework<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Journal of the American Society of Echocardiography, <\/span><span class=\"tp_pub_additional_volume\">vol. 37, <\/span><span class=\"tp_pub_additional_issue\">iss. 2, <\/span><span class=\"tp_pub_additional_pages\">pp. 259-267, <\/span><span class=\"tp_pub_additional_year\">2024<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_936\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('936','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_936\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('936','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_936\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('936','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_936\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2024b,<br \/>\r\ntitle = {Euclidean and shape-based analysis of the dynamic mitral annulus in children using a novel open-source framework},<br \/>\r\nauthor = {Silvani Amin and Hannah Dewey and Andras Lasso and Patricia Sabin and Ye Han and Jared Vicory and Beatriz Paniagua and Christian Herz and Hannah Nam and Alana Cianciulli and Maura Flynn and Devin W Laurence and David Harrild and Gabor Fichtinger and Meryl S Cohen and Matthew A Jolley},<br \/>\r\nurl = {https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0894731723005941},<br \/>\r\nyear  = {2024},<br \/>\r\ndate = {2024-01-01},<br \/>\r\njournal = {Journal of the American Society of Echocardiography},<br \/>\r\nvolume = {37},<br \/>\r\nissue = {2},<br \/>\r\npages = {259-267},<br \/>\r\npublisher = {Mosby},<br \/>\r\nabstract = {Background <br \/>\r\nThe dynamic shape of the normal adult mitral annulus has been shown to be important to mitral valve function. However, annular dynamics of the healthy mitral valve in children have yet to be explored. The aim of this study was to model and quantify the shape and major modes of variation of pediatric mitral valve annuli in four phases of the cardiac cycle using transthoracic echocardiography. <br \/>\r\nMethods <br \/>\r\nThe mitral valve annuli of 100 children and young adults with normal findings on three-dimensional echocardiography were modeled in four different cardiac phases using the SlicerHeart extension for 3D Slicer. Annular metrics were quantified using SlicerHeart, and optimal normalization to body surface area was explored. Mean annular shapes and the principal components of variation were computed using custom code implemented in a new SlicerHeart module (Annulus Shape Analyzer). Shape was \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('936','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_936\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Background <br \/>\r\nThe dynamic shape of the normal adult mitral annulus has been shown to be important to mitral valve function. However, annular dynamics of the healthy mitral valve in children have yet to be explored. The aim of this study was to model and quantify the shape and major modes of variation of pediatric mitral valve annuli in four phases of the cardiac cycle using transthoracic echocardiography. <br \/>\r\nMethods <br \/>\r\nThe mitral valve annuli of 100 children and young adults with normal findings on three-dimensional echocardiography were modeled in four different cardiac phases using the SlicerHeart extension for 3D Slicer. Annular metrics were quantified using SlicerHeart, and optimal normalization to body surface area was explored. Mean annular shapes and the principal components of variation were computed using custom code implemented in a new SlicerHeart module (Annulus Shape Analyzer). Shape was \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('936','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_936\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0894731723005941\" title=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0894731723005941\" target=\"_blank\">https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0894731723005941<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('936','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Nam, Hannah H;  Flynn, Maura;  Lasso, Andras;  Herz, Christian;  Sabin, Patricia;  Wang, Yan;  Cianciulli, Alana;  Vigil, Chad;  Huang, Jing;  Vicory, Jared;  Paniagua, Beatriz;  Allemang, David;  Goldberg, David J;  Nuri, Mohammed;  Cohen, Meryl S;  Fichtinger, Gabor;  Jolley, Matthew A<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/www.ahajournals.org\/doi\/abs\/10.1161\/CIRCIMAGING.122.014671\" title=\"https:\/\/www.ahajournals.org\/doi\/abs\/10.1161\/CIRCIMAGING.122.014671\" target=\"blank\">Modeling of the tricuspid valve and right ventricle in hypoplastic left heart syndrome with a Fontan circulation<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Circulation: Cardiovascular Imaging, <\/span><span class=\"tp_pub_additional_volume\">vol. 16, <\/span><span class=\"tp_pub_additional_issue\">iss. 3, <\/span><span class=\"tp_pub_additional_pages\">pp. e014671, <\/span><span class=\"tp_pub_additional_year\">2023<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_914\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('914','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_914\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('914','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_914\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('914','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_914\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2023c,<br \/>\r\ntitle = {Modeling of the tricuspid valve and right ventricle in hypoplastic left heart syndrome with a Fontan circulation},<br \/>\r\nauthor = {Hannah H Nam and Maura Flynn and Andras Lasso and Christian Herz and Patricia Sabin and Yan Wang and Alana Cianciulli and Chad Vigil and Jing Huang and Jared Vicory and Beatriz Paniagua and David Allemang and David J Goldberg and Mohammed Nuri and Meryl S Cohen and Gabor Fichtinger and Matthew A Jolley},<br \/>\r\nurl = {https:\/\/www.ahajournals.org\/doi\/abs\/10.1161\/CIRCIMAGING.122.014671},<br \/>\r\nyear  = {2023},<br \/>\r\ndate = {2023-01-01},<br \/>\r\njournal = {Circulation: Cardiovascular Imaging},<br \/>\r\nvolume = {16},<br \/>\r\nissue = {3},<br \/>\r\npages = {e014671},<br \/>\r\npublisher = {Lippincott Williams & Wilkins},<br \/>\r\nabstract = {Background <br \/>\r\nIn hypoplastic left heart syndrome, tricuspid regurgitation (TR) is associated with circulatory failure and death. We hypothesized that the tricuspid valve (TV) structure of patients with hypoplastic left heart syndrome with a Fontan circulation and moderate or greater TR differs from those with mild or less TR, and that right ventricle volume is associated with TV structure and dysfunction. <br \/>\r\nMethods <br \/>\r\nTV of 100 patients with hypoplastic left heart syndrome and a Fontan circulation were modeled using transthoracic 3-dimensional echocardiograms and custom software in SlicerHeart. Associations of TV structure to TR grade and right ventricle function and volume were investigated. Shape parameterization and analysis was used to calculate the mean shape of the TV leaflets, their principal modes of variation, and to characterize associations of TV leaflet shape to TR. <br \/>\r\nResults <br \/>\r\nIn univariate modeling, patients with \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('914','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_914\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Background <br \/>\r\nIn hypoplastic left heart syndrome, tricuspid regurgitation (TR) is associated with circulatory failure and death. We hypothesized that the tricuspid valve (TV) structure of patients with hypoplastic left heart syndrome with a Fontan circulation and moderate or greater TR differs from those with mild or less TR, and that right ventricle volume is associated with TV structure and dysfunction. <br \/>\r\nMethods <br \/>\r\nTV of 100 patients with hypoplastic left heart syndrome and a Fontan circulation were modeled using transthoracic 3-dimensional echocardiograms and custom software in SlicerHeart. Associations of TV structure to TR grade and right ventricle function and volume were investigated. Shape parameterization and analysis was used to calculate the mean shape of the TV leaflets, their principal modes of variation, and to characterize associations of TV leaflet shape to TR. <br \/>\r\nResults <br \/>\r\nIn univariate modeling, patients with \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('914','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_914\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/www.ahajournals.org\/doi\/abs\/10.1161\/CIRCIMAGING.122.014671\" title=\"https:\/\/www.ahajournals.org\/doi\/abs\/10.1161\/CIRCIMAGING.122.014671\" target=\"_blank\">https:\/\/www.ahajournals.org\/doi\/abs\/10.1161\/CIRCIMAGING.122.014671<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('914','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Lasso, Andras;  Herz, Christian;  Nam, Hannah;  Cianciulli, Alana;  Pieper, Steve;  Drouin, Simon;  Pinter, Csaba;  St-Onge, Samuelle;  Vigil, Chad;  Ching, Stephen;  Sunderland, Kyle;  Fichtinger, Gabor;  Kikinis, Ron;  Jolley, Matthew A<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/www.frontiersin.org\/articles\/10.3389\/fcvm.2022.886549\/full\" title=\"https:\/\/www.frontiersin.org\/articles\/10.3389\/fcvm.2022.886549\/full\" target=\"blank\">SlicerHeart: An open-source computing platform for cardiac image analysis and modeling<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_volume\">vol. 9, <\/span><span class=\"tp_pub_additional_pages\">pp. 886549, <\/span><span class=\"tp_pub_additional_year\">2022<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_801\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('801','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_801\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('801','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_801\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('801','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_801\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2022c,<br \/>\r\ntitle = {SlicerHeart: An open-source computing platform for cardiac image analysis and modeling},<br \/>\r\nauthor = {Andras Lasso and Christian Herz and Hannah Nam and Alana Cianciulli and Steve Pieper and Simon Drouin and Csaba Pinter and Samuelle St-Onge and Chad Vigil and Stephen Ching and Kyle Sunderland and Gabor Fichtinger and Ron Kikinis and Matthew A Jolley},<br \/>\r\nurl = {https:\/\/www.frontiersin.org\/articles\/10.3389\/fcvm.2022.886549\/full},<br \/>\r\nyear  = {2022},<br \/>\r\ndate = {2022-01-01},<br \/>\r\nvolume = {9},<br \/>\r\npages = {886549},<br \/>\r\npublisher = {Frontiers},<br \/>\r\nabstract = {Cardiovascular disease is a significant cause of morbidity and mortality in the developed world. 3D imaging of the heart\u2019s structure is critical to the understanding and treatment of cardiovascular disease. However, open-source tools for image analysis of cardiac images, particularly 3D echocardiographic (3DE) data, are limited. We describe the rationale, development, implementation, and application of SlicerHeart, a cardiac-focused toolkit for image analysis built upon 3D Slicer, an open-source image computing platform. We designed and implemented multiple Python scripted modules within 3D Slicer to import, register, and view 3DE data, including new code to volume render and crop 3DE. In addition, we developed dedicated workflows for the modeling and quantitative analysis of multi-modality image-derived heart models, including heart valves. Finally, we created and integrated new functionality to facilitate the planning of cardiac interventions and surgery. We demonstrate application of SlicerHeart to a diverse range of cardiovascular modeling and simulation including volume rendering of 3DE images, mitral valve modeling, transcatheter device modeling, and planning of complex surgical intervention such as cardiac baffle creation. SlicerHeart is an evolving open-source image processing platform based on 3D Slicer initiated to support the investigation and treatment of congenital heart disease. The technology in SlicerHeart provides a robust foundation for 3D image-based investigation in cardiovascular medicine.},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('801','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_801\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Cardiovascular disease is a significant cause of morbidity and mortality in the developed world. 3D imaging of the heart\u2019s structure is critical to the understanding and treatment of cardiovascular disease. However, open-source tools for image analysis of cardiac images, particularly 3D echocardiographic (3DE) data, are limited. We describe the rationale, development, implementation, and application of SlicerHeart, a cardiac-focused toolkit for image analysis built upon 3D Slicer, an open-source image computing platform. We designed and implemented multiple Python scripted modules within 3D Slicer to import, register, and view 3DE data, including new code to volume render and crop 3DE. In addition, we developed dedicated workflows for the modeling and quantitative analysis of multi-modality image-derived heart models, including heart valves. Finally, we created and integrated new functionality to facilitate the planning of cardiac interventions and surgery. We demonstrate application of SlicerHeart to a diverse range of cardiovascular modeling and simulation including volume rendering of 3DE images, mitral valve modeling, transcatheter device modeling, and planning of complex surgical intervention such as cardiac baffle creation. SlicerHeart is an evolving open-source image processing platform based on 3D Slicer initiated to support the investigation and treatment of congenital heart disease. The technology in SlicerHeart provides a robust foundation for 3D image-based investigation in cardiovascular medicine.<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('801','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_801\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/www.frontiersin.org\/articles\/10.3389\/fcvm.2022.886549\/full\" title=\"https:\/\/www.frontiersin.org\/articles\/10.3389\/fcvm.2022.886549\/full\" target=\"_blank\">https:\/\/www.frontiersin.org\/articles\/10.3389\/fcvm.2022.886549\/full<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('801','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Connolly, Laura;  Jamzad, Amoon;  Nikniazi, Arash;  Poushimin, Rana;  Lasso, Andras;  Sunderland, Kyle R.;  Ungi, Tamas;  Nunzi, Jean Michel;  Rudan, John;  Fichtinger, Gabor;  Mousavi, Parvin<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/01\/Connolly2022b.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/01\/Connolly2022b.pdf\" target=\"blank\">An open-source testbed for developing image-guided robotic tumor-bed inspection<\/a> <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">Imaging Network of Ontario (ImNO) Symposium, <\/span><span class=\"tp_pub_additional_year\">2022<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_28\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('28','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_28\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('28','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_28\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{connolly2022b,<br \/>\r\ntitle = {An open-source testbed for developing image-guided robotic tumor-bed inspection},<br \/>\r\nauthor = {Laura Connolly and Amoon Jamzad and Arash Nikniazi and Rana Poushimin and Andras Lasso and Kyle R. Sunderland and Tamas Ungi and Jean Michel Nunzi and John Rudan and Gabor Fichtinger and Parvin Mousavi},<br \/>\r\nurl = {https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/01\/Connolly2022b.pdf},<br \/>\r\nyear  = {2022},<br \/>\r\ndate = {2022-01-01},<br \/>\r\nurldate = {2022-01-01},<br \/>\r\nbooktitle = {Imaging Network of Ontario (ImNO) Symposium},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('28','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_28\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/01\/Connolly2022b.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/01\/Connolly20[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/01\/Connolly20[...]<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('28','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Nam, Hannah H;  Dinh, Patrick V;  Lasso, Andras;  Herz, Christian;  Huang, Jing;  Posada, Adriana;  Aly, Ahmed H;  Pouch, Alison M;  Kabir, Saleha;  Simpson, John;  Glatz, Andrew C;  Harrild, David M;  Marx, Gerald;  Fichtinger, Gabor;  Cohen, Meryl S;  Jolley, Matthew A<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0003497520321585\" title=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0003497520321585\" target=\"blank\">Dynamic annular modeling of the unrepaired complete atrioventricular canal annulus<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">The Annals of thoracic surgery, <\/span><span class=\"tp_pub_additional_volume\">vol. 113, <\/span><span class=\"tp_pub_additional_issue\">iss. 2, <\/span><span class=\"tp_pub_additional_pages\">pp. 654-662, <\/span><span class=\"tp_pub_additional_year\">2022<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_855\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('855','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_855\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('855','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_855\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('855','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_855\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2022g,<br \/>\r\ntitle = {Dynamic annular modeling of the unrepaired complete atrioventricular canal annulus},<br \/>\r\nauthor = {Hannah H Nam and Patrick V Dinh and Andras Lasso and Christian Herz and Jing Huang and Adriana Posada and Ahmed H Aly and Alison M Pouch and Saleha Kabir and John Simpson and Andrew C Glatz and David M Harrild and Gerald Marx and Gabor Fichtinger and Meryl S Cohen and Matthew A Jolley},<br \/>\r\nurl = {https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0003497520321585},<br \/>\r\nyear  = {2022},<br \/>\r\ndate = {2022-01-01},<br \/>\r\njournal = {The Annals of thoracic surgery},<br \/>\r\nvolume = {113},<br \/>\r\nissue = {2},<br \/>\r\npages = {654-662},<br \/>\r\npublisher = {Elsevier},<br \/>\r\nabstract = {Background <br \/>\r\nRepair of complete atrioventricular canal (CAVC) is often complicated by atrioventricular valve regurgitation, particularly of the left-sided valve. Understanding the 3-dimensional (3D) structure of the atrioventricular canal annulus before repair may help to inform optimized repair. However, the 3D shape and movement of the CAVC annulus has been neither quantified nor rigorously compared with a normal mitral valve annulus. <br \/>\r\nMethods <br \/>\r\nThe complete annuli of 43 patients with CAVC were modeled in 4 cardiac phases using transthoracic 3D echocardiograms and custom code. The annular structure was compared with the annuli of 20 normal pediatric mitral valves using 3D metrics and statistical shape analysis (Procrustes analysis). <br \/>\r\nResults <br \/>\r\nThe unrepaired CAVC annulus varied in shape significantly throughout the cardiac cycle. Procrustes analysis visually demonstrated that the average normalized CAVC \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('855','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_855\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Background <br \/>\r\nRepair of complete atrioventricular canal (CAVC) is often complicated by atrioventricular valve regurgitation, particularly of the left-sided valve. Understanding the 3-dimensional (3D) structure of the atrioventricular canal annulus before repair may help to inform optimized repair. However, the 3D shape and movement of the CAVC annulus has been neither quantified nor rigorously compared with a normal mitral valve annulus. <br \/>\r\nMethods <br \/>\r\nThe complete annuli of 43 patients with CAVC were modeled in 4 cardiac phases using transthoracic 3D echocardiograms and custom code. The annular structure was compared with the annuli of 20 normal pediatric mitral valves using 3D metrics and statistical shape analysis (Procrustes analysis). <br \/>\r\nResults <br \/>\r\nThe unrepaired CAVC annulus varied in shape significantly throughout the cardiac cycle. Procrustes analysis visually demonstrated that the average normalized CAVC \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('855','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_855\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0003497520321585\" title=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0003497520321585\" target=\"_blank\">https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0003497520321585<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('855','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Connolly, Laura;  Degeut, Anton;  Sunderland, Kyle R.;  Lasso, Andras;  Ungi, Tamas;  Rudan, John;  Taylor, Russell H.;  Mousavi, Parvin;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/dx.doi.org\/https:\/\/doi.org\/10.1109\/ICAS49788.2021.9551149\" title=\"An open-source platform for cooperative semi-autonomous robotic surgery\" target=\"blank\">An open-source platform for cooperative semi-autonomous robotic surgery<\/a> <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">IEEE International Conference on Autonomous Systems, <\/span><span class=\"tp_pub_additional_organization\">IEEE <\/span><span class=\"tp_pub_additional_publisher\">IEEE, <\/span><span class=\"tp_pub_additional_address\">Montreal, Quebec, <\/span><span class=\"tp_pub_additional_year\">2021<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_38\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('38','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_38\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('38','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_38\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{Connolly2021,<br \/>\r\ntitle = {An open-source platform for cooperative semi-autonomous robotic surgery},<br \/>\r\nauthor = {Laura Connolly and Anton Degeut and Kyle R. Sunderland and Andras Lasso and Tamas Ungi and John Rudan and Russell H. Taylor and Parvin Mousavi and Gabor Fichtinger},<br \/>\r\ndoi = {https:\/\/doi.org\/10.1109\/ICAS49788.2021.9551149},<br \/>\r\nyear  = {2021},<br \/>\r\ndate = {2021-10-01},<br \/>\r\nurldate = {2021-10-01},<br \/>\r\nbooktitle = {IEEE International Conference on Autonomous Systems},<br \/>\r\npublisher = {IEEE},<br \/>\r\naddress = {Montreal, Quebec},<br \/>\r\norganization = {IEEE},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('38','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_38\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/https:\/\/doi.org\/10.1109\/ICAS49788.2021.9551149\" title=\"Follow DOI:https:\/\/doi.org\/10.1109\/ICAS49788.2021.9551149\" target=\"_blank\">doi:https:\/\/doi.org\/10.1109\/ICAS49788.2021.9551149<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('38','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Connolly, Laura;  Deguet, Anton;  Sunderland, Kyle;  Lasso, Andras;  Ungi, Tamas;  Rudan, John F;  Taylor, Russell H;  Mousavi, Parvin;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/ieeexplore.ieee.org\/abstract\/document\/9551149\/\" title=\"https:\/\/ieeexplore.ieee.org\/abstract\/document\/9551149\/\" target=\"blank\">An open-source platform for cooperative, semi-autonomous robotic surgery<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_pages\">pp. 1-5, <\/span><span class=\"tp_pub_additional_year\">2021<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_868\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('868','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_868\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('868','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_868\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('868','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_868\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2021d,<br \/>\r\ntitle = {An open-source platform for cooperative, semi-autonomous robotic surgery},<br \/>\r\nauthor = {Laura Connolly and Anton Deguet and Kyle Sunderland and Andras Lasso and Tamas Ungi and John F Rudan and Russell H Taylor and Parvin Mousavi and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/ieeexplore.ieee.org\/abstract\/document\/9551149\/},<br \/>\r\nyear  = {2021},<br \/>\r\ndate = {2021-01-01},<br \/>\r\npages = {1-5},<br \/>\r\npublisher = {IEEE},<br \/>\r\nabstract = {Introduction <br \/>\r\nIn this paper, we present and assess a proof of concept platform for semi-autonomous, cooperative robotic surgery. The platform is easily reproducible thanks to simple hardware components and open-source software. Moreover, the design accommodates open, soft tissue surgeries that recent advancements in surgical robotics do not generally focus on. <br \/>\r\nMethods <br \/>\r\nThe system is made up of an inexpensive robotic manipulator, a navigation system and a software interface. Accuracy measurement is performed on a rigid phantom that mimics the conditions of breast conserving surgery (BCS) as an example of a surgical use case. <br \/>\r\nResults <br \/>\r\nThe average target registration error (TRE) and fiducial registration error (FRE) of the system is within 1 mm. This indicates that the navigation system is sufficient for certain surgical applications such as BCS. The platform can also be easily replicated and used in a lab or \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('868','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_868\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Introduction <br \/>\r\nIn this paper, we present and assess a proof of concept platform for semi-autonomous, cooperative robotic surgery. The platform is easily reproducible thanks to simple hardware components and open-source software. Moreover, the design accommodates open, soft tissue surgeries that recent advancements in surgical robotics do not generally focus on. <br \/>\r\nMethods <br \/>\r\nThe system is made up of an inexpensive robotic manipulator, a navigation system and a software interface. Accuracy measurement is performed on a rigid phantom that mimics the conditions of breast conserving surgery (BCS) as an example of a surgical use case. <br \/>\r\nResults <br \/>\r\nThe average target registration error (TRE) and fiducial registration error (FRE) of the system is within 1 mm. This indicates that the navigation system is sufficient for certain surgical applications such as BCS. The platform can also be easily replicated and used in a lab or \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('868','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_868\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/ieeexplore.ieee.org\/abstract\/document\/9551149\/\" title=\"https:\/\/ieeexplore.ieee.org\/abstract\/document\/9551149\/\" target=\"_blank\">https:\/\/ieeexplore.ieee.org\/abstract\/document\/9551149\/<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('868','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Cianciulli, Alana;  Lasso, Andras;  Pinter, Csaba;  Ching, Stephen;  Ghosh, Reena M;  Chen, Tiffany;  Herz, Christian;  Vigil, Chad;  Drouin, Simon;  Rogers, Lindsay S;  Quartermain, Michael D;  Biko, David M;  Whitehead, Kevin K;  Fichtinger, Gabor;  Gillespie, Matthew J;  Jolley, Matthew A<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/www.onlinejase.com\/article\/S0894-7317(21)00588-5\/abstract\" title=\"https:\/\/www.onlinejase.com\/article\/S0894-7317(21)00588-5\/abstract\" target=\"blank\">Simulation of delivery of clip-based therapies within multimodality images to facilitate preprocedural planning<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Journal of the American Society of Echocardiography, <\/span><span class=\"tp_pub_additional_volume\">vol. 34, <\/span><span class=\"tp_pub_additional_issue\">iss. 10, <\/span><span class=\"tp_pub_additional_pages\">pp. 1111-1114, <\/span><span class=\"tp_pub_additional_year\">2021<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_880\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('880','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_880\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('880','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_880\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('880','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_880\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2021g,<br \/>\r\ntitle = {Simulation of delivery of clip-based therapies within multimodality images to facilitate preprocedural planning},<br \/>\r\nauthor = {Alana Cianciulli and Andras Lasso and Csaba Pinter and Stephen Ching and Reena M Ghosh and Tiffany Chen and Christian Herz and Chad Vigil and Simon Drouin and Lindsay S Rogers and Michael D Quartermain and David M Biko and Kevin K Whitehead and Gabor Fichtinger and Matthew J Gillespie and Matthew A Jolley},<br \/>\r\nurl = {https:\/\/www.onlinejase.com\/article\/S0894-7317(21)00588-5\/abstract},<br \/>\r\nyear  = {2021},<br \/>\r\ndate = {2021-01-01},<br \/>\r\njournal = {Journal of the American Society of Echocardiography},<br \/>\r\nvolume = {34},<br \/>\r\nissue = {10},<br \/>\r\npages = {1111-1114},<br \/>\r\npublisher = {Elsevier},<br \/>\r\nabstract = {Brief Research Communications 1111 repair (TEER) has emerged as a therapeutic option for the treatment of severe mitral regurgitation and tricuspid regurgitation and avoids the morbidity and mortality associated with open heart surgery. 1, 2 One challenge to the successful application of this therapy is delivering the clip to a precise location within the constraints of the unique anatomy and resulting geometry of an individual patient. Threedimensional echocardiography (3DE) is typically used to plan and execute TEER using catheter delivery systems designed to access a specific anatomic location (mitral valve, tricuspid valve) via a known path. These systems are then empirically validated and iteratively improved via large clinical trials and clinical practice. However, there has been little work on modeling the catheter path and approach to deliver the clip to the desired location in atypical or surgically altered \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('880','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_880\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Brief Research Communications 1111 repair (TEER) has emerged as a therapeutic option for the treatment of severe mitral regurgitation and tricuspid regurgitation and avoids the morbidity and mortality associated with open heart surgery. 1, 2 One challenge to the successful application of this therapy is delivering the clip to a precise location within the constraints of the unique anatomy and resulting geometry of an individual patient. Threedimensional echocardiography (3DE) is typically used to plan and execute TEER using catheter delivery systems designed to access a specific anatomic location (mitral valve, tricuspid valve) via a known path. These systems are then empirically validated and iteratively improved via large clinical trials and clinical practice. However, there has been little work on modeling the catheter path and approach to deliver the clip to the desired location in atypical or surgically altered \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('880','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_880\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/www.onlinejase.com\/article\/S0894-7317(21)00588-5\/abstract\" title=\"https:\/\/www.onlinejase.com\/article\/S0894-7317(21)00588-5\/abstract\" target=\"_blank\">https:\/\/www.onlinejase.com\/article\/S0894-7317(21)00588-5\/abstract<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('880','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Connolly, Laura;  Sunderland, Kyle R.;  Lasso, Andras;  Degeut, Anton;  Ungi, Tamas;  Rudan, John;  Taylor, Russell H.;  Mousavi, Parvin;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Connolly2021a_1.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Connolly2021a_1.pdf\" target=\"blank\">A platform for robot-assisted Intraoperative imaging in breast conserving surgery<\/a> <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">Imaging Network of Ontario Symposium, <\/span><span class=\"tp_pub_additional_publisher\">Imaging Network of Ontario Symposium, <\/span><span class=\"tp_pub_additional_address\">Online, <\/span><span class=\"tp_pub_additional_year\">2021<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_39\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('39','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_39\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('39','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_39\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{Connolly2021b,<br \/>\r\ntitle = {A platform for robot-assisted Intraoperative imaging in breast conserving surgery},<br \/>\r\nauthor = {Laura Connolly and Kyle R. Sunderland and Andras Lasso and Anton Degeut and Tamas Ungi and John Rudan and Russell H. Taylor and Parvin Mousavi and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Connolly2021a_1.pdf},<br \/>\r\nyear  = {2021},<br \/>\r\ndate = {2021-01-01},<br \/>\r\nurldate = {2021-01-01},<br \/>\r\nbooktitle = {Imaging Network of Ontario Symposium},<br \/>\r\npublisher = {Imaging Network of Ontario Symposium},<br \/>\r\naddress = {Online},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('39','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_39\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Connolly2021a_1.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Connolly20[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Connolly20[...]<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('39','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Herz, Christian;  Cianciulli, Alana;  Ching, Stephen;  Vigil, Chad;  Lasso, Andras;  Nam, Hannah H;  Drouin, Simon;  Biko, David M;  Gillespie, Matthew;  Fichtinger, Gabor;  Jolley, Matthew A<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/www.onlinejase.com\/article\/S0894-7317(21)00180-2\/abstract\" title=\"https:\/\/www.onlinejase.com\/article\/S0894-7317(21)00180-2\/abstract\" target=\"blank\">Open-source tool kit for interactive planning of transcatheter mitral valve replacement using multimodality imaging<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Journal of the American Society of Echocardiography, <\/span><span class=\"tp_pub_additional_volume\">vol. 34, <\/span><span class=\"tp_pub_additional_issue\">iss. 8, <\/span><span class=\"tp_pub_additional_pages\">pp. 917-920, <\/span><span class=\"tp_pub_additional_year\">2021<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_918\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('918','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_918\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('918','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_918\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('918','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_918\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2021j,<br \/>\r\ntitle = {Open-source tool kit for interactive planning of transcatheter mitral valve replacement using multimodality imaging},<br \/>\r\nauthor = {Christian Herz and Alana Cianciulli and Stephen Ching and Chad Vigil and Andras Lasso and Hannah H Nam and Simon Drouin and David M Biko and Matthew Gillespie and Gabor Fichtinger and Matthew A Jolley},<br \/>\r\nurl = {https:\/\/www.onlinejase.com\/article\/S0894-7317(21)00180-2\/abstract},<br \/>\r\nyear  = {2021},<br \/>\r\ndate = {2021-01-01},<br \/>\r\njournal = {Journal of the American Society of Echocardiography},<br \/>\r\nvolume = {34},<br \/>\r\nissue = {8},<br \/>\r\npages = {917-920},<br \/>\r\npublisher = {Elsevier},<br \/>\r\nabstract = {Brief Research Communications 917 outflow tract (LVOT) obstruction or perivalvar leak. 2 However, the complexity of cardiac anatomy can make two-dimensional and even three-dimensional (3D) derived linear measurements difficult to translate into improved appropriate device selection, which in turn has led to exploration of CT-derived virtual and 3D printing-based modeling. 3, 4 While CT-based structural modeling software is now commercially available, and there is mitral annular modeling available in commercial 3DE-based platforms, to our knowledge there is no configurable modeling platform of 3DE modeling that allows the insertion of a library of existing and customizable virtual devices into 3DE images to see how devices would actually fit. In order to potentially inform patient candidacy, appropriate device selection, and the design of new devices for transcatheter mitral valve (TMV) therapies, we created \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('918','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_918\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Brief Research Communications 917 outflow tract (LVOT) obstruction or perivalvar leak. 2 However, the complexity of cardiac anatomy can make two-dimensional and even three-dimensional (3D) derived linear measurements difficult to translate into improved appropriate device selection, which in turn has led to exploration of CT-derived virtual and 3D printing-based modeling. 3, 4 While CT-based structural modeling software is now commercially available, and there is mitral annular modeling available in commercial 3DE-based platforms, to our knowledge there is no configurable modeling platform of 3DE modeling that allows the insertion of a library of existing and customizable virtual devices into 3DE images to see how devices would actually fit. In order to potentially inform patient candidacy, appropriate device selection, and the design of new devices for transcatheter mitral valve (TMV) therapies, we created \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('918','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_918\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/www.onlinejase.com\/article\/S0894-7317(21)00180-2\/abstract\" title=\"https:\/\/www.onlinejase.com\/article\/S0894-7317(21)00180-2\/abstract\" target=\"_blank\">https:\/\/www.onlinejase.com\/article\/S0894-7317(21)00180-2\/abstract<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('918','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Gauvin, Gabrielle;  Yeo, Caitlin T;  Ungi, Tamas;  Merchant, Shaila;  Lasso, Andras;  Jabs, Doris;  Vaughan, Thomas;  Rudan, John;  Walker, Ross;  Fichtinger, Gabor;  Engel, C. Jay<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/dx.doi.org\/10.1111\/tbj.13480\" title=\"Real-time electromagnetic navigation for breast-conserving surgery using NaviKnife technology: A matched case-control study\" target=\"blank\">Real-time electromagnetic navigation for breast-conserving surgery using NaviKnife technology: A matched case-control study<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">The Breast Journal, <\/span><span class=\"tp_pub_additional_volume\">vol. 26, <\/span><span class=\"tp_pub_additional_number\">no. 3, <\/span><span class=\"tp_pub_additional_pages\">pp. 399-405, <\/span><span class=\"tp_pub_additional_year\">2020<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_53\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('53','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_53\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('53','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_53\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Gauvin2019,<br \/>\r\ntitle = {Real-time electromagnetic navigation for breast-conserving surgery using NaviKnife technology: A matched case-control study},<br \/>\r\nauthor = {Gabrielle Gauvin and Caitlin T Yeo and Tamas Ungi and Shaila Merchant and Andras Lasso and Doris Jabs and Thomas Vaughan and John Rudan and Ross Walker and Gabor Fichtinger and C. Jay Engel},<br \/>\r\ndoi = {10.1111\/tbj.13480},<br \/>\r\nyear  = {2020},<br \/>\r\ndate = {2020-09-01},<br \/>\r\nurldate = {2020-09-01},<br \/>\r\njournal = {The Breast Journal},<br \/>\r\nvolume = {26},<br \/>\r\nnumber = {3},<br \/>\r\npages = {399-405},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('53','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_53\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1111\/tbj.13480\" title=\"Follow DOI:10.1111\/tbj.13480\" target=\"_blank\">doi:10.1111\/tbj.13480<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('53','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Pinter, Csaba;  Lasso, Andras;  Choueib, Saleh;  Asselin, Mark;  Fillion-Robin, Jean-ChristopheC.;  Vimort, Jean-Baptiste;  Martin, Ken;  Jolley, MatthewA;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/dx.doi.org\/10.1109\/TMRB.2020.2983199\" title=\"SlicerVR for Medical Intervention Training and Planning in Immersive Virtual Reality\" target=\"blank\">SlicerVR for Medical Intervention Training and Planning in Immersive Virtual Reality<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">IEEE Transactions on Medical Robotics and Bionics, <\/span><span class=\"tp_pub_additional_volume\">vol. 2, <\/span><span class=\"tp_pub_additional_number\">no. 2, <\/span><span class=\"tp_pub_additional_pages\">pp. 108-117, <\/span><span class=\"tp_pub_additional_year\">2020<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_56\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('56','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_56\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('56','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_56\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('56','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_56\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Pinter2020,<br \/>\r\ntitle = {SlicerVR for Medical Intervention Training and Planning in Immersive Virtual Reality},<br \/>\r\nauthor = {Csaba Pinter and Andras Lasso and Saleh Choueib and Mark Asselin and Jean-ChristopheC. Fillion-Robin and Jean-Baptiste Vimort and Ken Martin and MatthewA Jolley and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/03\/Pinter2020a_0.pdf},<br \/>\r\ndoi = {10.1109\/TMRB.2020.2983199},<br \/>\r\nyear  = {2020},<br \/>\r\ndate = {2020-03-01},<br \/>\r\nurldate = {2020-03-01},<br \/>\r\njournal = {IEEE Transactions on Medical Robotics and Bionics},<br \/>\r\nvolume = {2},<br \/>\r\nnumber = {2},<br \/>\r\npages = {108-117},<br \/>\r\nabstract = {&lt;p&gt;Virtual reality (VR) provides immersive visualization that has proved to be useful in a variety of medical applications. Currently, however, no free open-source software platform exists that would provide comprehensive support for translational clinical researchers in prototyping experimental VR scenarios in training, planning or guiding medical interventions. By integrating VR functions in 3D Slicer, an established medical image analysis and visualization platform, SlicerVR enables virtual reality experience by a single click. It provides functions to navigate and manipulate the virtual scene, as well as various settings to abate the feeling of motion sickness. SlicerVR allows for shared collaborative VR experience both locally and remotely. We present illustrative scenarios created with SlicerVR in a wide spectrum of applications, including echocardiography, neurosurgery, spine surgery, brachytherapy, intervention training and personalized patient education. SlicerVR is freely available under BSD type license as an extension to 3D Slicer and it has been downloaded over 7,800 times at the time of writing this article.&lt;\/p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('56','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_56\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;p&gt;Virtual reality (VR) provides immersive visualization that has proved to be useful in a variety of medical applications. Currently, however, no free open-source software platform exists that would provide comprehensive support for translational clinical researchers in prototyping experimental VR scenarios in training, planning or guiding medical interventions. By integrating VR functions in 3D Slicer, an established medical image analysis and visualization platform, SlicerVR enables virtual reality experience by a single click. It provides functions to navigate and manipulate the virtual scene, as well as various settings to abate the feeling of motion sickness. SlicerVR allows for shared collaborative VR experience both locally and remotely. We present illustrative scenarios created with SlicerVR in a wide spectrum of applications, including echocardiography, neurosurgery, spine surgery, brachytherapy, intervention training and personalized patient education. SlicerVR is freely available under BSD type license as an extension to 3D Slicer and it has been downloaded over 7,800 times at the time of writing this article.&lt;\/p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('56','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_56\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/03\/Pinter2020a_0.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/03\/Pinter2020[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/03\/Pinter2020[...]<\/a><\/li><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1109\/TMRB.2020.2983199\" title=\"Follow DOI:10.1109\/TMRB.2020.2983199\" target=\"_blank\">doi:10.1109\/TMRB.2020.2983199<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('56','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Nam, Hannah H;  Herz, Christian;  Lasso, Andras;  Drouin, Simon;  Posada, Adriana;  Morray, Brian;  O'Byrne, Michael L;  Paniagua, Beatriz;  Joffe, Denise;  Mackensen, Burkhard;  Rogers, Lindsay;  Fichtinger, Gabor;  Jolley, Matthew A<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/www.onlinejase.com\/article\/S0894-7317(20)30033-X\/abstract\" title=\"https:\/\/www.onlinejase.com\/article\/S0894-7317(20)30033-X\/abstract\" target=\"blank\">Simulation of transcatheter atrial and ventricular septal defect device closure within three-dimensional echocardiography\u2013derived heart models on screen and in virtual reality<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Journal of the American Society of Echocardiography, <\/span><span class=\"tp_pub_additional_volume\">vol. 33, <\/span><span class=\"tp_pub_additional_issue\">iss. 5, <\/span><span class=\"tp_pub_additional_pages\">pp. 641-644. e2, <\/span><span class=\"tp_pub_additional_year\">2020<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_815\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('815','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_815\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('815','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_815\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('815','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_815\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2020e,<br \/>\r\ntitle = {Simulation of transcatheter atrial and ventricular septal defect device closure within three-dimensional echocardiography\u2013derived heart models on screen and in virtual reality},<br \/>\r\nauthor = {Hannah H Nam and Christian Herz and Andras Lasso and Simon Drouin and Adriana Posada and Brian Morray and Michael L O'Byrne and Beatriz Paniagua and Denise Joffe and Burkhard Mackensen and Lindsay Rogers and Gabor Fichtinger and Matthew A Jolley},<br \/>\r\nurl = {https:\/\/www.onlinejase.com\/article\/S0894-7317(20)30033-X\/abstract},<br \/>\r\nyear  = {2020},<br \/>\r\ndate = {2020-01-01},<br \/>\r\njournal = {Journal of the American Society of Echocardiography},<br \/>\r\nvolume = {33},<br \/>\r\nissue = {5},<br \/>\r\npages = {641-644. e2},<br \/>\r\npublisher = {Elsevier},<br \/>\r\nabstract = {Appropriate matching of the device to the defect is crucial to successfully close the defect and to prevent complications such as device embolization, erosion, and obstruction of structures near the device. Two-dimensional (2D) echocardiographic and three-dimensional (3D) echocardiographic data are used to inform this process but typically require multiple measurements in different imaging planes. The complexity of cardiac anatomy can make 2D-and even 3D-derived linear measurements difficult to translate into improved contextualization of relevant patient anatomy and appropriate device selection. To inform patient selection and appropriate device selection for ASD and VSD closure, we created a modeling and visualization system to insert virtual device models into both segmented and volumerendered 3D echocardiographic images of patients with ASDs and VSDs using custom code in 3D Slicer. 2, 3 First \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('815','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_815\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Appropriate matching of the device to the defect is crucial to successfully close the defect and to prevent complications such as device embolization, erosion, and obstruction of structures near the device. Two-dimensional (2D) echocardiographic and three-dimensional (3D) echocardiographic data are used to inform this process but typically require multiple measurements in different imaging planes. The complexity of cardiac anatomy can make 2D-and even 3D-derived linear measurements difficult to translate into improved contextualization of relevant patient anatomy and appropriate device selection. To inform patient selection and appropriate device selection for ASD and VSD closure, we created a modeling and visualization system to insert virtual device models into both segmented and volumerendered 3D echocardiographic images of patients with ASDs and VSDs using custom code in 3D Slicer. 2, 3 First \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('815','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_815\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/www.onlinejase.com\/article\/S0894-7317(20)30033-X\/abstract\" title=\"https:\/\/www.onlinejase.com\/article\/S0894-7317(20)30033-X\/abstract\" target=\"_blank\">https:\/\/www.onlinejase.com\/article\/S0894-7317(20)30033-X\/abstract<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('815','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Janssen, Natasja NY;  Brastianos, Harry;  Akingbade, Aquila;  Olding, Tim;  Vaughan, Thomas;  Ungi, Tamas;  Lasso, Andras;  Joshi, Chandra;  Korzeniowski, Martin;  Falkson, Conrad;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/link.springer.com\/article\/10.1007\/s11548-020-02233-9\" title=\"https:\/\/link.springer.com\/article\/10.1007\/s11548-020-02233-9\" target=\"blank\">Electromagnetic (EM) catheter path tracking in ultrasound-guided brachytherapy of the breast<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">International journal of computer assisted radiology and surgery, <\/span><span class=\"tp_pub_additional_volume\">vol. 15, <\/span><span class=\"tp_pub_additional_pages\">pp. 1645-1652, <\/span><span class=\"tp_pub_additional_year\">2020<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_882\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('882','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_882\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('882','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_882\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('882','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_882\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2020j,<br \/>\r\ntitle = {Electromagnetic (EM) catheter path tracking in ultrasound-guided brachytherapy of the breast},<br \/>\r\nauthor = {Natasja NY Janssen and Harry Brastianos and Aquila Akingbade and Tim Olding and Thomas Vaughan and Tamas Ungi and Andras Lasso and Chandra Joshi and Martin Korzeniowski and Conrad Falkson and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/link.springer.com\/article\/10.1007\/s11548-020-02233-9},<br \/>\r\nyear  = {2020},<br \/>\r\ndate = {2020-01-01},<br \/>\r\njournal = {International journal of computer assisted radiology and surgery},<br \/>\r\nvolume = {15},<br \/>\r\npages = {1645-1652},<br \/>\r\npublisher = {Springer International Publishing},<br \/>\r\nabstract = {Purpose <br \/>\r\nTo evaluate a novel navigation system for breast brachytherapy, based on ultrasound (US)-guided catheter needle implantations followed by electromagnetic (EM) tracking of catheter paths. <br \/>\r\nMethods <br \/>\r\nBreast phantoms were produced, containing US\u2013visible tumors. Ultrasound was used to localize the tumor pose and volume within the phantom, followed by planning an optimal catheter pattern through the tumor using navigation software. An electromagnetic (EM)-tracked catheter needle was used to insert the catheters in the desired pattern. The inserted catheters were visualized on a post-implant CT, serving as ground truth. Electromagnetic (EM) tracking and reconstruction of the inserted catheter paths were performed by pulling a flexible EM guidewire through each catheter, performed in two clinical brachytherapy suites. The accuracy of EM catheter tracking was evaluated by calculating the Hausdorff \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('882','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_882\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Purpose <br \/>\r\nTo evaluate a novel navigation system for breast brachytherapy, based on ultrasound (US)-guided catheter needle implantations followed by electromagnetic (EM) tracking of catheter paths. <br \/>\r\nMethods <br \/>\r\nBreast phantoms were produced, containing US\u2013visible tumors. Ultrasound was used to localize the tumor pose and volume within the phantom, followed by planning an optimal catheter pattern through the tumor using navigation software. An electromagnetic (EM)-tracked catheter needle was used to insert the catheters in the desired pattern. The inserted catheters were visualized on a post-implant CT, serving as ground truth. Electromagnetic (EM) tracking and reconstruction of the inserted catheter paths were performed by pulling a flexible EM guidewire through each catheter, performed in two clinical brachytherapy suites. The accuracy of EM catheter tracking was evaluated by calculating the Hausdorff \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('882','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_882\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/link.springer.com\/article\/10.1007\/s11548-020-02233-9\" title=\"https:\/\/link.springer.com\/article\/10.1007\/s11548-020-02233-9\" target=\"_blank\">https:\/\/link.springer.com\/article\/10.1007\/s11548-020-02233-9<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('882','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Fedorov, Andriy;  Beichel, Reinhard;  Kalpathy-Cramer, Jayashree;  Clunie, David;  Onken, Michael;  Riesmeier, J\u00f6rg;  Herz, Christian;  Bauer, Christian;  Beers, Andrew;  Fillion-Robin, Jean-ChristopheC.;  Lasso, Andras;  Pinter, Csaba;  Pieper, Steve;  Nolden, Marco;  Maier-Hein, Klaus;  Herrmann, Markus D.;  Saltz, Joel;  Prior, Fred;  Fennessy, Fiona M.;  Buatti, John;  Kikinis, Ron<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/dx.doi.org\/https:\/\/doi.org\/10. 1200\/CCI.19.00165\" title=\"Quantitative Imaging Informatics for Cancer Research\" target=\"blank\">Quantitative Imaging Informatics for Cancer Research<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">JCO Clinical Cancer Informatics, <\/span><span class=\"tp_pub_additional_volume\">vol. 4, <\/span><span class=\"tp_pub_additional_pages\">pp. 444-453., <\/span><span class=\"tp_pub_additional_year\">2020<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_52\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('52','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_52\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('52','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_52\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Fedorov2020,<br \/>\r\ntitle = {Quantitative Imaging Informatics for Cancer Research},<br \/>\r\nauthor = {Andriy Fedorov and Reinhard Beichel and Jayashree Kalpathy-Cramer and David Clunie and Michael Onken and J\u00f6rg Riesmeier and Christian Herz and Christian Bauer and Andrew Beers and Jean-ChristopheC. Fillion-Robin and Andras Lasso and Csaba Pinter and Steve Pieper and Marco Nolden and Klaus Maier-Hein and Markus D. Herrmann and Joel Saltz and Fred Prior and Fiona M. Fennessy and John Buatti and Ron Kikinis},<br \/>\r\nurl = {https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Fedorov2020.pdf},<br \/>\r\ndoi = {https:\/\/doi.org\/10. 1200\/CCI.19.00165},<br \/>\r\nyear  = {2020},<br \/>\r\ndate = {2020-01-01},<br \/>\r\nurldate = {2020-01-01},<br \/>\r\njournal = {JCO Clinical Cancer Informatics},<br \/>\r\nvolume = {4},<br \/>\r\npages = {444-453.},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('52','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_52\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Fedorov2020.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Fedorov202[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Fedorov202[...]<\/a><\/li><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/https:\/\/doi.org\/10. 1200\/CCI.19.00165\" title=\"Follow DOI:https:\/\/doi.org\/10. 1200\/CCI.19.00165\" target=\"_blank\">doi:https:\/\/doi.org\/10. 1200\/CCI.19.00165<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('52','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Barr, Colton;  Lasso, Andras;  Asselin, Mark;  Pieper, Steve;  Robertson, Faith C.;  Gormley, William B.;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/dx.doi.org\/10.1117\/12.2549723\" title=\"Towards portable image guidance and automatic patient registration using an RGB-D camera and video projector\" target=\"blank\">Towards portable image guidance and automatic patient registration using an RGB-D camera and video projector<\/a> <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions and Modeling, <\/span><span class=\"tp_pub_additional_volume\">vol. 11315, <\/span><span class=\"tp_pub_additional_organization\">SPIE <\/span><span class=\"tp_pub_additional_publisher\">SPIE, <\/span><span class=\"tp_pub_additional_address\">Houston, Texas, United States, <\/span><span class=\"tp_pub_additional_year\">2020<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_57\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('57','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_57\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('57','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_57\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{BarrC2020,<br \/>\r\ntitle = {Towards portable image guidance and automatic patient registration using an RGB-D camera and video projector},<br \/>\r\nauthor = {Colton Barr and Andras Lasso and Mark Asselin and Steve Pieper and Faith C. Robertson and William B. Gormley and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Barr2020.pdf},<br \/>\r\ndoi = {10.1117\/12.2549723},<br \/>\r\nyear  = {2020},<br \/>\r\ndate = {2020-01-01},<br \/>\r\nurldate = {2020-01-01},<br \/>\r\nbooktitle = {Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions and Modeling},<br \/>\r\nvolume = {11315},<br \/>\r\npublisher = {SPIE},<br \/>\r\naddress = {Houston, Texas, United States},<br \/>\r\norganization = {SPIE},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('57','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_57\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Barr2020.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Barr2020.p[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Barr2020.p[...]<\/a><\/li><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1117\/12.2549723\" title=\"Follow DOI:10.1117\/12.2549723\" target=\"_blank\">doi:10.1117\/12.2549723<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('57','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Choi, Perry S;  Nam, Hannah H;  Lasso, Andras;  Herz, Christian;  Drouin, Simon;  Harrild, David M;  Quartermain, Michael;  Fichtinger, Gabor;  Mascio, Christopher E;  Emani, Sitaram;  Jolley, Matthew A<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0003497520303908\" title=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0003497520303908\" target=\"blank\">Three-dimensional modeling of surgically implanted stent-based valves in the mitral position in children<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">The Annals of thoracic surgery, <\/span><span class=\"tp_pub_additional_volume\">vol. 110, <\/span><span class=\"tp_pub_additional_issue\">iss. 2, <\/span><span class=\"tp_pub_additional_pages\">pp. 670-675, <\/span><span class=\"tp_pub_additional_year\">2020<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_856\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('856','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_856\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('856','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_856\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('856','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_856\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2020f,<br \/>\r\ntitle = {Three-dimensional modeling of surgically implanted stent-based valves in the mitral position in children},<br \/>\r\nauthor = {Perry S Choi and Hannah H Nam and Andras Lasso and Christian Herz and Simon Drouin and David M Harrild and Michael Quartermain and Gabor Fichtinger and Christopher E Mascio and Sitaram Emani and Matthew A Jolley},<br \/>\r\nurl = {https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0003497520303908},<br \/>\r\nyear  = {2020},<br \/>\r\ndate = {2020-01-01},<br \/>\r\njournal = {The Annals of thoracic surgery},<br \/>\r\nvolume = {110},<br \/>\r\nissue = {2},<br \/>\r\npages = {670-675},<br \/>\r\npublisher = {Elsevier},<br \/>\r\nabstract = {Purpose <br \/>\r\nIn children with a mitral annulus too small to accommodate traditional prostheses, surgical implantation of stent-based valves is a promising option. However no reliable preoperative methods exist to guide patient selection, device sizing, and positioning. We describe a novel methodology to visualize and quantify device fit in 3-dimensional echocardiogram (3DE)-derived heart models. <br \/>\r\nDescription <br \/>\r\nHeart models were created from existing preoperative 3DEs using custom software. Valve models were virtually implanted into the models, and both device fit and left ventricular outflow tract (LVOT) area were quantified. <br \/>\r\nEvaluation <br \/>\r\nThe 3DEs of 3 patients who underwent Melody valve placement in the mitral position were retrospectively modeled: 1 with LVOT obstruction, 1 with perivalvar leak, and 1 without complications. In all cases 2-dimensional measurements underestimated 3D annular dimensions, and the \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('856','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_856\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Purpose <br \/>\r\nIn children with a mitral annulus too small to accommodate traditional prostheses, surgical implantation of stent-based valves is a promising option. However no reliable preoperative methods exist to guide patient selection, device sizing, and positioning. We describe a novel methodology to visualize and quantify device fit in 3-dimensional echocardiogram (3DE)-derived heart models. <br \/>\r\nDescription <br \/>\r\nHeart models were created from existing preoperative 3DEs using custom software. Valve models were virtually implanted into the models, and both device fit and left ventricular outflow tract (LVOT) area were quantified. <br \/>\r\nEvaluation <br \/>\r\nThe 3DEs of 3 patients who underwent Melody valve placement in the mitral position were retrospectively modeled: 1 with LVOT obstruction, 1 with perivalvar leak, and 1 without complications. In all cases 2-dimensional measurements underestimated 3D annular dimensions, and the \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('856','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_856\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0003497520303908\" title=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0003497520303908\" target=\"_blank\">https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0003497520303908<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('856','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Chen, Elvis CS;  Lasso, Andras;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/B9780128161760000363\" title=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/B9780128161760000363\" target=\"blank\">External tracking devices and tracked tool calibration<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_pages\">pp. 777-794, <\/span><span class=\"tp_pub_additional_year\">2020<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_858\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('858','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_858\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('858','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_858\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('858','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_858\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2020h,<br \/>\r\ntitle = {External tracking devices and tracked tool calibration},<br \/>\r\nauthor = {Elvis CS Chen and Andras Lasso and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/www.sciencedirect.com\/science\/article\/pii\/B9780128161760000363},<br \/>\r\nyear  = {2020},<br \/>\r\ndate = {2020-01-01},<br \/>\r\npages = {777-794},<br \/>\r\npublisher = {Academic Press},<br \/>\r\nabstract = {Spatial measure device, i.e. tracking system, is the enabling technology for any surgical navigation system. The primary function of a tracking system is to infer the pose (orientation and position) of surgical instrument intraoperatively in real time. The secondary function is patient registration: locations of anatomical landmarks can be inferred by the use of a tracked and calibrated surgical instrument. Because the tracking system can only track its pose sensor directly, a pose sensor must be integrated into the surgical instrument; the geometry of the instrument must be related to its pose sensor via a spatial calibration process. This chapter provides a short overview on the principle tracking technology, error propagation, and specifics of surgical instrument calibration.},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('858','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_858\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Spatial measure device, i.e. tracking system, is the enabling technology for any surgical navigation system. The primary function of a tracking system is to infer the pose (orientation and position) of surgical instrument intraoperatively in real time. The secondary function is patient registration: locations of anatomical landmarks can be inferred by the use of a tracked and calibrated surgical instrument. Because the tracking system can only track its pose sensor directly, a pose sensor must be integrated into the surgical instrument; the geometry of the instrument must be related to its pose sensor via a spatial calibration process. This chapter provides a short overview on the principle tracking technology, error propagation, and specifics of surgical instrument calibration.<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('858','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_858\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/B9780128161760000363\" title=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/B9780128161760000363\" target=\"_blank\">https:\/\/www.sciencedirect.com\/science\/article\/pii\/B9780128161760000363<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('858','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Choi, Perry S.;  Nam, HannahH;  Lasso, Andras;  Herz, Christian;  Drouin, Simon;  Harrild, David M.;  Quartermain, Michael;  Fichtinger, Gabor;  Mascio, Christopher E.;  Emani, Sitaram;  Jolley, MatthewA<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/dx.doi.org\/10.1016\/j.athoracsur.2020.02.020\" title=\"3D Modeling of Surgically Implanted Stent-Based Valves in the Mitral Position in Children\" target=\"blank\">3D Modeling of Surgically Implanted Stent-Based Valves in the Mitral Position in Children<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">The Annals of Thoracic Surgery, <\/span><span class=\"tp_pub_additional_year\">2020<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_45\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('45','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_45\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('45','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_45\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Choi2020,<br \/>\r\ntitle = {3D Modeling of Surgically Implanted Stent-Based Valves in the Mitral Position in Children},<br \/>\r\nauthor = {Perry S. Choi and HannahH Nam and Andras Lasso and Christian Herz and Simon Drouin and David M. Harrild and Michael Quartermain and Gabor Fichtinger and Christopher E. Mascio and Sitaram Emani and MatthewA Jolley},<br \/>\r\nurl = {https:\/\/doi.org\/10.1016\/j.athoracsur.2020.02.020<br \/>\r\n},<br \/>\r\ndoi = {10.1016\/j.athoracsur.2020.02.020},<br \/>\r\nyear  = {2020},<br \/>\r\ndate = {2020-01-01},<br \/>\r\nurldate = {2020-01-01},<br \/>\r\njournal = {The Annals of Thoracic Surgery},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('45','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_45\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/doi.org\/10.1016\/j.athoracsur.2020.02.020\" title=\"https:\/\/doi.org\/10.1016\/j.athoracsur.2020.02.020\" target=\"_blank\">https:\/\/doi.org\/10.1016\/j.athoracsur.2020.02.020<\/a><\/li><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1016\/j.athoracsur.2020.02.020\" title=\"Follow DOI:10.1016\/j.athoracsur.2020.02.020\" target=\"_blank\">doi:10.1016\/j.athoracsur.2020.02.020<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('45','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Gauvin, Gabrielle;  Yeo, Caitlin T;  Ungi, Tamas;  Merchant, Shaila;  Lasso, Andras;  Jabs, Doris;  Vaughan, Thomas;  Rudan, John F;  Walker, Ross;  Fichtinger, Gabor;  Engel, Cecil Jay<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/onlinelibrary.wiley.com\/doi\/abs\/10.1111\/tbj.13480\" title=\"https:\/\/onlinelibrary.wiley.com\/doi\/abs\/10.1111\/tbj.13480\" target=\"blank\">Real\u2010time electromagnetic navigation for breast\u2010conserving surgery using NaviKnife technology: A matched case\u2010control study<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">The breast journal, <\/span><span class=\"tp_pub_additional_volume\">vol. 26, <\/span><span class=\"tp_pub_additional_issue\">iss. 3, <\/span><span class=\"tp_pub_additional_pages\">pp. 399-405, <\/span><span class=\"tp_pub_additional_year\">2020<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_783\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('783','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_783\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('783','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_783\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('783','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_783\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2020c,<br \/>\r\ntitle = {Real\u2010time electromagnetic navigation for breast\u2010conserving surgery using NaviKnife technology: A matched case\u2010control study},<br \/>\r\nauthor = {Gabrielle Gauvin and Caitlin T Yeo and Tamas Ungi and Shaila Merchant and Andras Lasso and Doris Jabs and Thomas Vaughan and John F Rudan and Ross Walker and Gabor Fichtinger and Cecil Jay Engel},<br \/>\r\nurl = {https:\/\/onlinelibrary.wiley.com\/doi\/abs\/10.1111\/tbj.13480},<br \/>\r\nyear  = {2020},<br \/>\r\ndate = {2020-01-01},<br \/>\r\njournal = {The breast journal},<br \/>\r\nvolume = {26},<br \/>\r\nissue = {3},<br \/>\r\npages = {399-405},<br \/>\r\nabstract = {Breast\u2010conserving surgery (BCS) is a mainstay in breast cancer treatment. For nonpalpable breast cancers, current strategies have limited accuracy, contributing to high positive margin rates. We developed NaviKnife, a surgical navigation system based on real\u2010time electromagnetic (EM) tracking. The goal of this study was to confirm the feasibility of intraoperative EM navigation in patients with nonpalpable breast cancer and to assess the potential value of surgical navigation. We recruited 40 patients with ultrasound visible, single, nonpalpable lesions, undergoing BCS. Feasibility was assessed by equipment functionality and sterility, acceptable duration of the operation, and surgeon feedback. Secondary outcomes included specimen volume, positive margin rate, and reoperation outcomes. Study patients were compared to a control group by a matched case\u2010control analysis. There was no equipment failure or \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('783','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_783\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Breast\u2010conserving surgery (BCS) is a mainstay in breast cancer treatment. For nonpalpable breast cancers, current strategies have limited accuracy, contributing to high positive margin rates. We developed NaviKnife, a surgical navigation system based on real\u2010time electromagnetic (EM) tracking. The goal of this study was to confirm the feasibility of intraoperative EM navigation in patients with nonpalpable breast cancer and to assess the potential value of surgical navigation. We recruited 40 patients with ultrasound visible, single, nonpalpable lesions, undergoing BCS. Feasibility was assessed by equipment functionality and sterility, acceptable duration of the operation, and surgeon feedback. Secondary outcomes included specimen volume, positive margin rate, and reoperation outcomes. Study patients were compared to a control group by a matched case\u2010control analysis. There was no equipment failure or \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('783','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_783\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/onlinelibrary.wiley.com\/doi\/abs\/10.1111\/tbj.13480\" title=\"https:\/\/onlinelibrary.wiley.com\/doi\/abs\/10.1111\/tbj.13480\" target=\"_blank\">https:\/\/onlinelibrary.wiley.com\/doi\/abs\/10.1111\/tbj.13480<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('783','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Pinter, Csaba;  Lasso, Andras;  Choueib, Saleh;  Asselin, Mark;  Fillion-Robin, Jean-Christophe;  Vimort, Jean-Baptiste;  Martin, Ken;  Jolley, Matthew A;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/ieeexplore.ieee.org\/abstract\/document\/9047949\/\" title=\"https:\/\/ieeexplore.ieee.org\/abstract\/document\/9047949\/\" target=\"blank\">SlicerVR for medical intervention training and planning in immersive virtual reality<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">IEEE transactions on medical robotics and bionics, <\/span><span class=\"tp_pub_additional_volume\">vol. 2, <\/span><span class=\"tp_pub_additional_issue\">iss. 2, <\/span><span class=\"tp_pub_additional_pages\">pp. 108-117, <\/span><span class=\"tp_pub_additional_year\">2020<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_757\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('757','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_757\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('757','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_757\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('757','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_757\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2020,<br \/>\r\ntitle = {SlicerVR for medical intervention training and planning in immersive virtual reality},<br \/>\r\nauthor = {Csaba Pinter and Andras Lasso and Saleh Choueib and Mark Asselin and Jean-Christophe Fillion-Robin and Jean-Baptiste Vimort and Ken Martin and Matthew A Jolley and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/ieeexplore.ieee.org\/abstract\/document\/9047949\/},<br \/>\r\nyear  = {2020},<br \/>\r\ndate = {2020-01-01},<br \/>\r\njournal = {IEEE transactions on medical robotics and bionics},<br \/>\r\nvolume = {2},<br \/>\r\nissue = {2},<br \/>\r\npages = {108-117},<br \/>\r\npublisher = {IEEE},<br \/>\r\nabstract = {Virtual reality (VR) provides immersive visualization that has proved to be useful in a variety of medical applications. Currently, however, no free open-source software platform exists that would provide comprehensive support for translational clinical researchers in prototyping experimental VR scenarios in training, planning or guiding medical interventions. By integrating VR functions in 3D Slicer, an established medical image analysis and visualization platform, SlicerVR enables virtual reality experience by a single click. It provides functions to navigate and manipulate the virtual scene, as well as various settings to abate the feeling of motion sickness. SlicerVR allows for shared collaborative VR experience both locally and remotely. We present illustrative scenarios created with SlicerVR in a wide spectrum of applications, including echocardiography, neurosurgery, spine surgery, brachytherapy, intervention \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('757','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_757\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Virtual reality (VR) provides immersive visualization that has proved to be useful in a variety of medical applications. Currently, however, no free open-source software platform exists that would provide comprehensive support for translational clinical researchers in prototyping experimental VR scenarios in training, planning or guiding medical interventions. By integrating VR functions in 3D Slicer, an established medical image analysis and visualization platform, SlicerVR enables virtual reality experience by a single click. It provides functions to navigate and manipulate the virtual scene, as well as various settings to abate the feeling of motion sickness. SlicerVR allows for shared collaborative VR experience both locally and remotely. We present illustrative scenarios created with SlicerVR in a wide spectrum of applications, including echocardiography, neurosurgery, spine surgery, brachytherapy, intervention \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('757','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_757\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/ieeexplore.ieee.org\/abstract\/document\/9047949\/\" title=\"https:\/\/ieeexplore.ieee.org\/abstract\/document\/9047949\/\" target=\"_blank\">https:\/\/ieeexplore.ieee.org\/abstract\/document\/9047949\/<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('757','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Nam, Hannah H;  Herz, Christian;  Lasso, Andras;  Drouin, Simon;  Posada, Adriana;  Morray, Brian;  O\u2019Byrne, Michael L;  Paniagua, Beatriz;  Joffe, Denise;  Mackensen, Burkhard;  Rogers, Lindsay;  Fichtinger, Gabor;  Jolley, Matthew A<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC8083019\/\" title=\"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC8083019\/\" target=\"blank\">Simulation of Transcatheter Atrial and Ventricular Septal Defect Device Closure Within 3D Echo Derived Heart Models On Screen and in Virtual Reality<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Journal of the American Society of Echocardiography: official publication of the American Society of Echocardiography, <\/span><span class=\"tp_pub_additional_volume\">vol. 33, <\/span><span class=\"tp_pub_additional_issue\">iss. 5, <\/span><span class=\"tp_pub_additional_pages\">pp. 641, <\/span><span class=\"tp_pub_additional_year\">2020<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_949\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('949','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_949\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('949','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_949\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('949','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_949\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2020l,<br \/>\r\ntitle = {Simulation of Transcatheter Atrial and Ventricular Septal Defect Device Closure Within 3D Echo Derived Heart Models On Screen and in Virtual Reality},<br \/>\r\nauthor = {Hannah H Nam and Christian Herz and Andras Lasso and Simon Drouin and Adriana Posada and Brian Morray and Michael L O\u2019Byrne and Beatriz Paniagua and Denise Joffe and Burkhard Mackensen and Lindsay Rogers and Gabor Fichtinger and Matthew A Jolley},<br \/>\r\nurl = {https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC8083019\/},<br \/>\r\nyear  = {2020},<br \/>\r\ndate = {2020-01-01},<br \/>\r\njournal = {Journal of the American Society of Echocardiography: official publication of the American Society of Echocardiography},<br \/>\r\nvolume = {33},<br \/>\r\nissue = {5},<br \/>\r\npages = {641},<br \/>\r\npublisher = {NIH Public Access},<br \/>\r\nabstract = {Transcatheter device closures of atrial septal defects (ASD) and ventricular septal defects (VSD) have many advantages over surgical repair. Percutaneous intervention avoids the morbidity and mortality associated with open heart surgery, and is associated with a shorter hospital stay, lower risk of complications, and lower procedural costs.[1] Appropriate matching of the device to the defect is crucial to successfully close the defect and to prevent complications such as device embolization, erosion, and obstruction of structures near the device. Two-dimensional (2D) echocardiographic and three-dimensional (3D) echocardiographic (3DE) data are used to inform this process, but typically require multiple measurements in different imaging planes. The complexity of cardiac anatomy can make 2D and even 3D derived linear measurements difficult to translate into improved contextualization of relevant patient anatomy \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('949','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_949\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Transcatheter device closures of atrial septal defects (ASD) and ventricular septal defects (VSD) have many advantages over surgical repair. Percutaneous intervention avoids the morbidity and mortality associated with open heart surgery, and is associated with a shorter hospital stay, lower risk of complications, and lower procedural costs.[1] Appropriate matching of the device to the defect is crucial to successfully close the defect and to prevent complications such as device embolization, erosion, and obstruction of structures near the device. Two-dimensional (2D) echocardiographic and three-dimensional (3D) echocardiographic (3DE) data are used to inform this process, but typically require multiple measurements in different imaging planes. The complexity of cardiac anatomy can make 2D and even 3D derived linear measurements difficult to translate into improved contextualization of relevant patient anatomy \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('949','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_949\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC8083019\/\" title=\"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC8083019\/\" target=\"_blank\">https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC8083019\/<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('949','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Yates, Lauren;  Connolly, Laura;  Jamzad, Amoon;  Asselin, Mark;  Rubino, Rachel;  Yam, Scott;  Ungi, Tamas;  Lasso, Andras;  Nicol, Christopher;  Mousavi, Parvin;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/11315\/1131519\/Robotic-tissue-scanning-with-biophotonic-probe\/10.1117\/12.2549635.short\" title=\"https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/11315\/1131519\/Robotic-tissue-scanning-with-biophotonic-probe\/10.1117\/12.2549635.short\" target=\"blank\">Robotic tissue scanning with biophotonic probe<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_volume\">vol. 11315, <\/span><span class=\"tp_pub_additional_pages\">pp. 330-335, <\/span><span class=\"tp_pub_additional_year\">2020<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_952\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('952','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_952\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('952','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_952\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('952','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_952\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2020o,<br \/>\r\ntitle = {Robotic tissue scanning with biophotonic probe},<br \/>\r\nauthor = {Lauren Yates and Laura Connolly and Amoon Jamzad and Mark Asselin and Rachel Rubino and Scott Yam and Tamas Ungi and Andras Lasso and Christopher Nicol and Parvin Mousavi and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/11315\/1131519\/Robotic-tissue-scanning-with-biophotonic-probe\/10.1117\/12.2549635.short},<br \/>\r\nyear  = {2020},<br \/>\r\ndate = {2020-01-01},<br \/>\r\nvolume = {11315},<br \/>\r\npages = {330-335},<br \/>\r\npublisher = {SPIE},<br \/>\r\nabstract = {PURPOSE <br \/>\r\nRaman spectroscopy is an optical imaging technique used to characterize tissue via molecular analysis. The use of Raman spectroscopy for real-time intraoperative tissue classification requires fast analysis with minimal human intervention. In order to have accurate predictions and classifications, a large and reliable database of tissue classifications with spectra results is required. We have developed a system that can be used to generate an efficient scanning path for robotic scanning of tissues using Raman spectroscopy. <br \/>\r\nMETHODS <br \/>\r\nA camera mounted to a robotic controller is used to take an image of a tissue slide. The corners of the tissue slides within the sample image are identified, and the size of the slide is calculated. The image is cropped to fit the size of the slide and the image is manipulated to identify the tissue contour. A grid set to fit around the size of the tissue is calculated and a grid \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('952','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_952\" style=\"display:none;\"><div class=\"tp_abstract_entry\">PURPOSE <br \/>\r\nRaman spectroscopy is an optical imaging technique used to characterize tissue via molecular analysis. The use of Raman spectroscopy for real-time intraoperative tissue classification requires fast analysis with minimal human intervention. In order to have accurate predictions and classifications, a large and reliable database of tissue classifications with spectra results is required. We have developed a system that can be used to generate an efficient scanning path for robotic scanning of tissues using Raman spectroscopy. <br \/>\r\nMETHODS <br \/>\r\nA camera mounted to a robotic controller is used to take an image of a tissue slide. The corners of the tissue slides within the sample image are identified, and the size of the slide is calculated. The image is cropped to fit the size of the slide and the image is manipulated to identify the tissue contour. A grid set to fit around the size of the tissue is calculated and a grid \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('952','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_952\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/11315\/1131519\/Robotic-tissue-scanning-with-biophotonic-probe\/10.1117\/12.2549635.short\" title=\"https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/11315\/1131519\/[...]\" target=\"_blank\">https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/11315\/1131519\/[...]<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('952','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Brastianos, Harry;  Janssen, Natasja;  Akingbade, Aquila;  Olding, Tim;  Vaughan, Thomas;  Ungi, Tamas;  Lasso, Andras;  Westerland, Mary;  Joshi, Chandra;  Korzeniowski, Martin;  Fichtinger, Gabor;  Falkson, Conrad<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/scholar.google.com\/scholar?cluster=9660613250415496944&amp;hl=en&amp;oi=scholarr\" title=\"https:\/\/scholar.google.com\/scholar?cluster=9660613250415496944&amp;hl=en&amp;oi=scholarr\" target=\"blank\">91: Use of Electromagnetic Tracking Technology to Reconstruct Catheter Paths in Breast Brachytherapy-A Pilot Study<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Radiotherapy and Oncology, <\/span><span class=\"tp_pub_additional_volume\">vol. 150, <\/span><span class=\"tp_pub_additional_pages\">pp. S41, <\/span><span class=\"tp_pub_additional_year\">2020<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_1022\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('1022','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_1022\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('1022','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_1022\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('1022','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_1022\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2020t,<br \/>\r\ntitle = {91: Use of Electromagnetic Tracking Technology to Reconstruct Catheter Paths in Breast Brachytherapy-A Pilot Study},<br \/>\r\nauthor = {Harry Brastianos and Natasja Janssen and Aquila Akingbade and Tim Olding and Thomas Vaughan and Tamas Ungi and Andras Lasso and Mary Westerland and Chandra Joshi and Martin Korzeniowski and Gabor Fichtinger and Conrad Falkson},<br \/>\r\nurl = {https:\/\/scholar.google.com\/scholar?cluster=9660613250415496944&hl=en&oi=scholarr},<br \/>\r\nyear  = {2020},<br \/>\r\ndate = {2020-01-01},<br \/>\r\njournal = {Radiotherapy and Oncology},<br \/>\r\nvolume = {150},<br \/>\r\npages = {S41},<br \/>\r\npublisher = {Elsevier},<br \/>\r\nabstract = {Conclusions: The combined modality treatment factors and outcomes are comparable to the results of ASCENDE-RT and remain an effective treatment option for IR and HR prostate cancer. Higher GGG, HRF, PPC are potentially associated with worse outcomes. People who had early relapse had worse OS as demonstrated by ASCENDE-RT.},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('1022','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_1022\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Conclusions: The combined modality treatment factors and outcomes are comparable to the results of ASCENDE-RT and remain an effective treatment option for IR and HR prostate cancer. Higher GGG, HRF, PPC are potentially associated with worse outcomes. People who had early relapse had worse OS as demonstrated by ASCENDE-RT.<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('1022','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_1022\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/scholar.google.com\/scholar?cluster=9660613250415496944&amp;hl=en&amp;oi=scholarr\" title=\"https:\/\/scholar.google.com\/scholar?cluster=9660613250415496944&amp;hl=en&amp;oi=[...]\" target=\"_blank\">https:\/\/scholar.google.com\/scholar?cluster=9660613250415496944&amp;hl=en&amp;oi=[...]<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('1022','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Lasso, Andras;  Pinter, Csaba;  Choueib, Saleh;  Ungi, Tamas;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Lasso2019.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Lasso2019.pdf\" target=\"blank\">Enhance medical software applications with immersive virtual reality experience<\/a> <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">Techna Symposium, <\/span><span class=\"tp_pub_additional_address\">Toronto, ON, Canada, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_70\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('70','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_70\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('70','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_70\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{Lasso2019,<br \/>\r\ntitle = {Enhance medical software applications with immersive virtual reality experience},<br \/>\r\nauthor = {Andras Lasso and Csaba Pinter and Saleh Choueib and Tamas Ungi and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Lasso2019.pdf},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-10-01},<br \/>\r\nurldate = {2019-10-01},<br \/>\r\nbooktitle = {Techna Symposium},<br \/>\r\naddress = {Toronto, ON, Canada},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('70','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_70\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Lasso2019.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Lasso2019.[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Lasso2019.[...]<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('70','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Vaughan, Thomas;  Brastianos, H;  Ungi, Tamas;  Lasso, Andras;  Falkson, Conrad;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Vaughan2019a_0.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Vaughan2019a_0.pdf\" target=\"blank\">Needle Navigation and Catheter Reconstruction for Breast Brachytherapy Using Open Source Software<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Acta Polytechnica Hungarica, <\/span><span class=\"tp_pub_additional_volume\">vol. 16, <\/span><span class=\"tp_pub_additional_number\">no. 8, <\/span><span class=\"tp_pub_additional_pages\">pp. 99-118, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_75\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('75','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_75\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('75','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_75\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('75','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_75\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Vaughan2019a,<br \/>\r\ntitle = {Needle Navigation and Catheter Reconstruction for Breast Brachytherapy Using Open Source Software},<br \/>\r\nauthor = {Thomas Vaughan and H Brastianos and Tamas Ungi and Andras Lasso and Conrad Falkson and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Vaughan2019a_0.pdf},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-09-01},<br \/>\r\nurldate = {2019-09-01},<br \/>\r\njournal = {Acta Polytechnica Hungarica},<br \/>\r\nvolume = {16},<br \/>\r\nnumber = {8},<br \/>\r\npages = {99-118},<br \/>\r\nabstract = {&lt;p&gt;\\emph{Abstract: Interstitial breast brachytherapy is a method to deliver radiation therapy directly to the site of cancer. It is a challenging procedure because of issues in localizing the seroma, needles, and catheters within the soft tissue. In this paper we present two open-source technologies based on electromagnetic tracking: a navigation system to help target needles using a tracked needle guide, and software for electromagnetic reconstruction of catheter paths. These technologies were validated phantom studies. We found that the navigation system helped a radiation oncologist to target needles more accurately than under ultrasound guidance (60 needles under each condition, 3.8 vs 3.3 mm placement error},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('75','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_75\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;p&gt;<em>Abstract: Interstitial breast brachytherapy is a method to deliver radiation therapy directly to the site of cancer. It is a challenging procedure because of issues in localizing the seroma, needles, and catheters within the soft tissue. In this paper we present two open-source technologies based on electromagnetic tracking: a navigation system to help target needles using a tracked needle guide, and software for electromagnetic reconstruction of catheter paths. These technologies were validated phantom studies. We found that the navigation system helped a radiation oncologist to target needles more accurately than under ultrasound guidance (60 needles under each condition, 3.8 vs 3.3 mm placement error<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('75','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_75\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Vaughan2019a_0.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Vaughan201[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Vaughan201[...]<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('75','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Pinter, Csaba;  Lasso, Andras;  Asselin, Mark;  Fillion-Robin, Jean-ChristopheC.;  Vimort, Jean-Baptiste;  Martin, Ken;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Pinter2019a_0.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Pinter2019a_0.pdf\" target=\"blank\">SlicerVR for image-guided therapy planning in immersive virtual reality<\/a> <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">The 12th Hamlyn Symposium on Medical Robotics, 23-26 June 2019, Imperial College, London, UK, <\/span><span class=\"tp_pub_additional_address\">London, UK, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_80\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('80','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_80\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('80','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_80\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{Pinter2019a,<br \/>\r\ntitle = {SlicerVR for image-guided therapy planning in immersive virtual reality},<br \/>\r\nauthor = {Csaba Pinter and Andras Lasso and Mark Asselin and Jean-ChristopheC. Fillion-Robin and Jean-Baptiste Vimort and Ken Martin and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Pinter2019a_0.pdf},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-06-01},<br \/>\r\nurldate = {2019-06-01},<br \/>\r\nbooktitle = {The 12th Hamlyn Symposium on Medical Robotics, 23-26 June 2019, Imperial College, London, UK},<br \/>\r\npages = {91-92},<br \/>\r\naddress = {London, UK},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('80','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_80\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Pinter2019a_0.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Pinter2019[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Pinter2019[...]<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('80','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Laframboise, Jacob;  Ungi, Tamas;  Lasso, Andras;  Asselin, Mark;  Holden, M.;  Tan, Pearl;  Hookey, Lawrence;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Laframboise2019a.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Laframboise2019a.pdf\" target=\"blank\">Analyzing the curvature of the colon in different patient positions<\/a> <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">SPIE Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling, <\/span><span class=\"tp_pub_additional_volume\">vol. 10951, <\/span><span class=\"tp_pub_additional_address\">San Diego, California, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_61\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('61','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_61\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('61','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_61\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{Laframboise2019a,<br \/>\r\ntitle = {Analyzing the curvature of the colon in different patient positions},<br \/>\r\nauthor = {Jacob Laframboise and Tamas Ungi and Andras Lasso and Mark Asselin and M. Holden and Pearl Tan and Lawrence Hookey and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Laframboise2019a.pdf},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-03-01},<br \/>\r\nurldate = {2019-03-01},<br \/>\r\nbooktitle = {SPIE Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling},<br \/>\r\nvolume = {10951},<br \/>\r\naddress = {San Diego, California},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('61','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_61\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Laframboise2019a.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Laframbois[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Laframbois[...]<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('61','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Choueib, Saleh;  Pinter, Csaba;  Lasso, Andras;  Fillion-Robin, Jean-ChristopheC.;  Vimort, Jean-Baptiste;  Martin, Ken;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Choueib2019b.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Choueib2019b.pdf\" target=\"blank\">Assessment of immersive medical virtual reality visualization using 3D Slicer<\/a> <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">17th Annual Imaging Network Ontario Symposium (ImNO), <\/span><span class=\"tp_pub_additional_address\">London, Ontario, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_62\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('62','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_62\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('62','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_62\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{Choueib2019b,<br \/>\r\ntitle = {Assessment of immersive medical virtual reality visualization using 3D Slicer},<br \/>\r\nauthor = {Saleh Choueib and Csaba Pinter and Andras Lasso and Jean-ChristopheC. Fillion-Robin and Jean-Baptiste Vimort and Ken Martin and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Choueib2019b.pdf},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-03-01},<br \/>\r\nurldate = {2019-03-01},<br \/>\r\nbooktitle = {17th Annual Imaging Network Ontario Symposium (ImNO)},<br \/>\r\naddress = {London, Ontario},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('62','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_62\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Choueib2019b.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Choueib201[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Choueib201[...]<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('62','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Choueib, Saleh;  Pinter, Csaba;  Lasso, Andras;  Fillion-Robin, Jean-ChristopheC.;  Vimort, Jean-Baptiste;  Martin, Ken;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Choueib2019a.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Choueib2019a.pdf\" target=\"blank\">Evaluation of 3D Slicer as a medical virtual reality visualization platform<\/a> <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">SPIE Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling, <\/span><span class=\"tp_pub_additional_volume\">vol. 10951, <\/span><span class=\"tp_pub_additional_number\">no. 38, <\/span><span class=\"tp_pub_additional_organization\">SPIE Medical Imaging <\/span><span class=\"tp_pub_additional_publisher\">SPIE Medical Imaging, <\/span><span class=\"tp_pub_additional_address\">San Diego, California, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_71\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('71','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_71\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('71','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_71\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{Choueib2019a,<br \/>\r\ntitle = {Evaluation of 3D Slicer as a medical virtual reality visualization platform},<br \/>\r\nauthor = {Saleh Choueib and Csaba Pinter and Andras Lasso and Jean-ChristopheC. Fillion-Robin and Jean-Baptiste Vimort and Ken Martin and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Choueib2019a.pdf},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-03-01},<br \/>\r\nurldate = {2019-03-01},<br \/>\r\nbooktitle = {SPIE Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling},<br \/>\r\nvolume = {10951},<br \/>\r\nnumber = {38},<br \/>\r\npublisher = {SPIE Medical Imaging},<br \/>\r\naddress = {San Diego, California},<br \/>\r\norganization = {SPIE Medical Imaging},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('71','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_71\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Choueib2019a.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Choueib201[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Choueib201[...]<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('71','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Connolly, Laura;  Ungi, Tamas;  Lasso, Andras;  Vaughan, Thomas;  Asselin, Mark;  Mousavi, Parvin;  Yam, Scott;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/dx.doi.org\/https:\/\/doi.org\/10.1117\/12.2512481\" title=\"Mechanically-Controlled Spectroscopic Imaging for Tissue Classification\" target=\"blank\">Mechanically-Controlled Spectroscopic Imaging for Tissue Classification<\/a> <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">SPIE Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling, <\/span><span class=\"tp_pub_additional_volume\">vol. 10951, <\/span><span class=\"tp_pub_additional_address\">San Diego, California, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_72\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('72','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_72\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('72','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_72\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{Connolly2019a,<br \/>\r\ntitle = {Mechanically-Controlled Spectroscopic Imaging for Tissue Classification},<br \/>\r\nauthor = {Laura Connolly and Tamas Ungi and Andras Lasso and Thomas Vaughan and Mark Asselin and Parvin Mousavi and Scott Yam and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Connolly2019a_3.pdf},<br \/>\r\ndoi = {https:\/\/doi.org\/10.1117\/12.2512481},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-03-01},<br \/>\r\nurldate = {2019-03-01},<br \/>\r\nbooktitle = {SPIE Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling},<br \/>\r\nvolume = {10951},<br \/>\r\naddress = {San Diego, California},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('72','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_72\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Connolly2019a_3.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Connolly20[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Connolly20[...]<\/a><\/li><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/https:\/\/doi.org\/10.1117\/12.2512481\" title=\"Follow DOI:https:\/\/doi.org\/10.1117\/12.2512481\" target=\"_blank\">doi:https:\/\/doi.org\/10.1117\/12.2512481<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('72','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Baum, Zachary M C;  Church, Ben;  Lasso, Andras;  Ungi, Tamas;  Schlenger, Christopher;  Borschneck, Daniel P.;  Mousavi, Parvin;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Baum2019a_0.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Baum2019a_0.pdf\" target=\"blank\">Step-wise identification of ultrasound-visible anatomical landmarks for 3D visualization of scoliotic spine<\/a> <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">SPIE Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling, <\/span><span class=\"tp_pub_additional_volume\">vol. 10951, <\/span><span class=\"tp_pub_additional_address\">San Diego, California, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_81\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('81','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_81\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('81','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_81\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{Baum2019a,<br \/>\r\ntitle = {Step-wise identification of ultrasound-visible anatomical landmarks for 3D visualization of scoliotic spine},<br \/>\r\nauthor = {Zachary M C Baum and Ben Church and Andras Lasso and Tamas Ungi and Christopher Schlenger and Daniel P. Borschneck and Parvin Mousavi and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Baum2019a_0.pdf},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-03-01},<br \/>\r\nurldate = {2019-03-01},<br \/>\r\nbooktitle = {SPIE Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling},<br \/>\r\nvolume = {10951},<br \/>\r\naddress = {San Diego, California},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('81','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_81\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Baum2019a_0.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Baum2019a_[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Baum2019a_[...]<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('81','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Pinter, Csaba;  Lasso, Andras;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/dx.doi.org\/https:\/\/doi.org\/10.1016\/j.cmpb.2019.02.011\" title=\"Polymorph Segmentation Representation for Medical Image Computing\" target=\"blank\">Polymorph Segmentation Representation for Medical Image Computing<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Computer Methods and Programs in Biomedicine, <\/span><span class=\"tp_pub_additional_volume\">vol. 171, <\/span><span class=\"tp_pub_additional_pages\">pp. 19-26, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_76\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('76','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_76\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('76','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_76\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('76','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_76\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Pinter2019,<br \/>\r\ntitle = {Polymorph Segmentation Representation for Medical Image Computing},<br \/>\r\nauthor = {Csaba Pinter and Andras Lasso and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Pinter2019_Manuscript.pdf},<br \/>\r\ndoi = {https:\/\/doi.org\/10.1016\/j.cmpb.2019.02.011},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-02-01},<br \/>\r\nurldate = {2019-02-01},<br \/>\r\njournal = {Computer Methods and Programs in Biomedicine},<br \/>\r\nvolume = {171},<br \/>\r\npages = {19-26},<br \/>\r\nabstract = {&lt;p&gt;&lt;strong&gt;Background and Objective: &lt;\/strong&gt;Segmentation is a ubiquitous operation in medical image computing. Various data representations can describe segmentation results, such as labelmap volumes or surface models. Conversions between them are often required, which typically include complex data processing steps. We identified four challenges related to managing multiple representations: &lt;a name=\"OLE_LINK3\"&gt;&lt;\/a&gt;&lt;a name=\"OLE_LINK2\"&gt;conversion &lt;\/a&gt;method selection, data provenance, data consistency, and coherence of in-memory objects. &lt;strong&gt;Methods:&lt;\/strong&gt; A complex data container preserves identity and provenance of the contained representations and ensures data coherence. Conversions are executed automatically on-demand. A graph containing the implemented conversion algorithms determines each execution, ensuring consistency between various representations. The design and implementation of a software library are proposed, in order to provide a readily usable software tool to manage segmentation data in multiple data representations. A low-level core library called PolySeg implemented in The Visualization Toolkit (VTK) manages the data objects and conversions. It is used by a high-level application layer, which has been implemented in the medical image visualization and analysis platform 3D Slicer. The application layer provides advanced visualization, transformation, interoperability, and other functions. &lt;strong&gt;Results: &lt;\/strong&gt;The core conversion algorithms comprising the graph were validated. Several applications were implemented based on the library, demonstrating advantages in terms of usability and ease of software development in each case. The Segment Editor application provides fast, comprehensive, and easy-to-use manual and semi-automatic segmentation workflows. Clinical applications for gel dosimetry, external beam planning, and MRI-ultrasound image fusion in brachytherapy were rapidly prototyped resulting robust applications that are already in use in clinical research. The conversion algorithms were found to be accurate and reliable using these applications. &lt;strong&gt;Conclusions:&lt;\/strong&gt;  A generic software library has been designed and developed for automatic management of multiple data formats in segmentation tasks. It enhances both user and developer experience, enabling fast and convenient manual workflows and quicker and more robust software prototyping. The software\u2019s BSD-style open-source license allows complete freedom of use of the library.&lt;\/p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('76','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_76\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;p&gt;&lt;strong&gt;Background and Objective: &lt;\/strong&gt;Segmentation is a ubiquitous operation in medical image computing. Various data representations can describe segmentation results, such as labelmap volumes or surface models. Conversions between them are often required, which typically include complex data processing steps. We identified four challenges related to managing multiple representations: &lt;a name=&quot;OLE_LINK3&quot;&gt;&lt;\/a&gt;&lt;a name=&quot;OLE_LINK2&quot;&gt;conversion &lt;\/a&gt;method selection, data provenance, data consistency, and coherence of in-memory objects. &lt;strong&gt;Methods:&lt;\/strong&gt; A complex data container preserves identity and provenance of the contained representations and ensures data coherence. Conversions are executed automatically on-demand. A graph containing the implemented conversion algorithms determines each execution, ensuring consistency between various representations. The design and implementation of a software library are proposed, in order to provide a readily usable software tool to manage segmentation data in multiple data representations. A low-level core library called PolySeg implemented in The Visualization Toolkit (VTK) manages the data objects and conversions. It is used by a high-level application layer, which has been implemented in the medical image visualization and analysis platform 3D Slicer. The application layer provides advanced visualization, transformation, interoperability, and other functions. &lt;strong&gt;Results: &lt;\/strong&gt;The core conversion algorithms comprising the graph were validated. Several applications were implemented based on the library, demonstrating advantages in terms of usability and ease of software development in each case. The Segment Editor application provides fast, comprehensive, and easy-to-use manual and semi-automatic segmentation workflows. Clinical applications for gel dosimetry, external beam planning, and MRI-ultrasound image fusion in brachytherapy were rapidly prototyped resulting robust applications that are already in use in clinical research. The conversion algorithms were found to be accurate and reliable using these applications. &lt;strong&gt;Conclusions:&lt;\/strong&gt;&amp;nbsp; A generic software library has been designed and developed for automatic management of multiple data formats in segmentation tasks. It enhances both user and developer experience, enabling fast and convenient manual workflows and quicker and more robust software prototyping. The software\u2019s BSD-style open-source license allows complete freedom of use of the library.&lt;\/p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('76','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_76\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Pinter2019_Manuscript.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Pinter2019[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Pinter2019[...]<\/a><\/li><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/https:\/\/doi.org\/10.1016\/j.cmpb.2019.02.011\" title=\"Follow DOI:https:\/\/doi.org\/10.1016\/j.cmpb.2019.02.011\" target=\"_blank\">doi:https:\/\/doi.org\/10.1016\/j.cmpb.2019.02.011<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('76','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Jolley, Matthew A;  Lasso, Andras;  Nam, Hannah H;  Dinh, Patrick V;  Scanlan, Adam B;  Nguyen, Alex V;  Ilina, Anna;  Morray, Brian;  Glatz, Andrew C;  McGowan, Francis X;  Whitehead, Kevin;  Dori, Yoav;  III, Joseph H Gorman;  Gorman, Robert C;  Fichtinger, Gabor;  Gillespie, Matthew J<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/onlinelibrary.wiley.com\/doi\/abs\/10.1002\/ccd.27962\" title=\"https:\/\/onlinelibrary.wiley.com\/doi\/abs\/10.1002\/ccd.27962\" target=\"blank\">Toward predictive modeling of catheter\u2010based pulmonary valve replacement into native right ventricular outflow tracts<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Catheterization and Cardiovascular Interventions, <\/span><span class=\"tp_pub_additional_volume\">vol. 93, <\/span><span class=\"tp_pub_additional_issue\">iss. 3, <\/span><span class=\"tp_pub_additional_pages\">pp. E143-E152, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_788\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('788','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_788\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('788','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_788\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('788','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_788\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2019e,<br \/>\r\ntitle = {Toward predictive modeling of catheter\u2010based pulmonary valve replacement into native right ventricular outflow tracts},<br \/>\r\nauthor = {Matthew A Jolley and Andras Lasso and Hannah H Nam and Patrick V Dinh and Adam B Scanlan and Alex V Nguyen and Anna Ilina and Brian Morray and Andrew C Glatz and Francis X McGowan and Kevin Whitehead and Yoav Dori and Joseph H Gorman III and Robert C Gorman and Gabor Fichtinger and Matthew J Gillespie},<br \/>\r\nurl = {https:\/\/onlinelibrary.wiley.com\/doi\/abs\/10.1002\/ccd.27962},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-01-01},<br \/>\r\njournal = {Catheterization and Cardiovascular Interventions},<br \/>\r\nvolume = {93},<br \/>\r\nissue = {3},<br \/>\r\npages = {E143-E152},<br \/>\r\npublisher = {John Wiley & Sons, Inc.},<br \/>\r\nabstract = {Background <br \/>\r\nPulmonary insufficiency is a consequence of transannular patch repair in Tetralogy of Fallot (ToF) leading to late morbidity and mortality. Transcatheter native outflow tract pulmonary valve replacement has become a reality. However, predicting a secure, atraumatic implantation of a catheter\u2010based device remains a significant challenge due to the complex and dynamic nature of the right ventricular outflow tract (RVOT). We sought to quantify the differences in compression and volume for actual implants, and those predicted by pre\u2010implant modeling. <br \/>\r\nMethods <br \/>\r\nWe used custom software to interactively place virtual transcatheter pulmonary valves (TPVs) into RVOT models created from pre\u2010implant and post Harmony valve implant CT scans of 5 ovine surgical models of TOF to quantify and visualize device volume and compression. <br \/>\r\nResults <br \/>\r\nVirtual device placement visually mimicked actual device \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('788','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_788\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Background <br \/>\r\nPulmonary insufficiency is a consequence of transannular patch repair in Tetralogy of Fallot (ToF) leading to late morbidity and mortality. Transcatheter native outflow tract pulmonary valve replacement has become a reality. However, predicting a secure, atraumatic implantation of a catheter\u2010based device remains a significant challenge due to the complex and dynamic nature of the right ventricular outflow tract (RVOT). We sought to quantify the differences in compression and volume for actual implants, and those predicted by pre\u2010implant modeling. <br \/>\r\nMethods <br \/>\r\nWe used custom software to interactively place virtual transcatheter pulmonary valves (TPVs) into RVOT models created from pre\u2010implant and post Harmony valve implant CT scans of 5 ovine surgical models of TOF to quantify and visualize device volume and compression. <br \/>\r\nResults <br \/>\r\nVirtual device placement visually mimicked actual device \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('788','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_788\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/onlinelibrary.wiley.com\/doi\/abs\/10.1002\/ccd.27962\" title=\"https:\/\/onlinelibrary.wiley.com\/doi\/abs\/10.1002\/ccd.27962\" target=\"_blank\">https:\/\/onlinelibrary.wiley.com\/doi\/abs\/10.1002\/ccd.27962<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('788','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Nguyen, Alexander V.;  Lasso, Andras;  Nam, HannahH;  Faerber, Jennifer;  Aly, Ahmed H.;  Pouch, Alison M.;  Scanlan, Adam B.;  McGowan, FrancisX;  Mercer-Rosa, Laura;  Cohen, Meryl S.;  Simpson, John;  Fichtinger, Gabor;  Jolley, MatthewA<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/dx.doi.org\/https:\/\/doi.org\/10.1016\/j.echo.2019.01.002\" title=\"Dynamic Three-Dimensional Geometry of the Tricuspid Valve Annulus in Hypoplastic Left Heart Syndrome with a Fontan Circulation\" target=\"blank\">Dynamic Three-Dimensional Geometry of the Tricuspid Valve Annulus in Hypoplastic Left Heart Syndrome with a Fontan Circulation<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Journal of the American Society of Echocardiography, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>, <span class=\"tp_pub_additional_issn\">ISSN: 0894-7317<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_69\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('69','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_69\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('69','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_69\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('69','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_69\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{NGUYEN2019,<br \/>\r\ntitle = {Dynamic Three-Dimensional Geometry of the Tricuspid Valve Annulus in Hypoplastic Left Heart Syndrome with a Fontan Circulation},<br \/>\r\nauthor = {Alexander V. Nguyen and Andras Lasso and HannahH Nam and Jennifer Faerber and Ahmed H. Aly and Alison M. Pouch and Adam B. Scanlan and FrancisX McGowan and Laura Mercer-Rosa and Meryl S. Cohen and John Simpson and Gabor Fichtinger and MatthewA Jolley},<br \/>\r\nurl = {http:\/\/www.sciencedirect.com\/science\/article\/pii\/S0894731719300021<br \/>\r\n},<br \/>\r\ndoi = {https:\/\/doi.org\/10.1016\/j.echo.2019.01.002},<br \/>\r\nissn = {0894-7317},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-01-01},<br \/>\r\nurldate = {2019-01-01},<br \/>\r\njournal = {Journal of the American Society of Echocardiography},<br \/>\r\nabstract = {&lt;p&gt;Background Tricuspid regurgitation (TR) is a significant contributor to morbidity and mortality in patients with hypoplastic left heart syndrome. The goal of this study was to characterize the dynamic annular motion of the tricuspid valve in patients with HLHS with a Fontan circulation and assess the relation to tricuspid valve function. Methods Tricuspid annuli of 48 patients with HLHS with a Fontan circulation were modeled at end-diastole, mid-systole, end-systole, and mid-diastole using transthoracic three-dimensional echocardiography and custom code in 3D Slicer. The angle of the anterior papillary muscle (APM) relative to the annular plane in each systolic phase was also measured. Results Imaging was performed 5.0 years (interquartile range, 2\u201311 years) after Fontan operation. The tricuspid annulus varies in shape significantly throughout the cardiac cycle, changing in sphericity (P &lt; .001) but not in annular height or bending angle. In univariate modeling, patients with significant TR had larger changes in septolateral diameter, lateral quadrant area, and posterior quadrant area (P &lt; .05 for all) as well as lower (more laterally directed) APM angles (P &lt; .001) than patients with mild or less TR. In multivariate modeling, a 1 mm\/(body surface area)0.5 increase in the maximum change in septolateral diameter was associated with a 1.7-fold increase in having moderate or greater TR, while a 10\u00b0 decrease in APM angle at mid-systole was associated with an almost 2.5-fold increase in moderate or greater TR (P &lt;= .01 for all). Conclusions The tricuspid annulus in patients with HLHS with a Fontan circulation changes in shape significantly throughout the cardiac cycle but remains relatively planar. Increased change in septolateral diameter and decreased APM angle are strongly associated with the presence of TR. These findings may inform annuloplasty methods and subvalvular interventions in these complex patients.&lt;\/p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('69','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_69\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;p&gt;Background Tricuspid regurgitation (TR) is a significant contributor to morbidity and mortality in patients with hypoplastic left heart syndrome. The goal of this study was to characterize the dynamic annular motion of the tricuspid valve in patients with HLHS with a Fontan circulation and assess the relation to tricuspid valve function. Methods Tricuspid annuli of 48 patients with HLHS with a Fontan circulation were modeled at end-diastole, mid-systole, end-systole, and mid-diastole using transthoracic three-dimensional echocardiography and custom code in 3D Slicer. The angle of the anterior papillary muscle (APM) relative to the annular plane in each systolic phase was also measured. Results Imaging was performed 5.0&amp;nbsp;years (interquartile range, 2\u201311&amp;nbsp;years) after Fontan operation. The tricuspid annulus varies in shape significantly throughout the cardiac cycle, changing in sphericity (P&amp;nbsp;&amp;lt;&amp;nbsp;.001) but not in annular height or bending angle. In univariate modeling, patients with significant TR had larger changes in septolateral diameter, lateral quadrant area, and posterior quadrant area (P&amp;nbsp;&amp;lt;&amp;nbsp;.05 for all) as well as lower (more laterally directed) APM angles (P&amp;nbsp;&amp;lt;&amp;nbsp;.001) than patients with mild or less TR. In multivariate modeling, a 1&amp;nbsp;mm\/(body surface area)0.5 increase in the maximum change in septolateral diameter was associated with a 1.7-fold increase in having moderate or greater TR, while a 10\u00b0 decrease in APM angle at mid-systole was associated with an almost 2.5-fold increase in moderate or greater TR (P&amp;nbsp;&lt;=&amp;nbsp;.01 for all). Conclusions The tricuspid annulus in patients with HLHS with a Fontan circulation changes in shape significantly throughout the cardiac cycle but remains relatively planar. Increased change in septolateral diameter and decreased APM angle are strongly associated with the presence of TR. These findings may inform annuloplasty methods and subvalvular interventions in these complex patients.&lt;\/p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('69','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_69\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S0894731719300021\" title=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S0894731719300021\" target=\"_blank\">http:\/\/www.sciencedirect.com\/science\/article\/pii\/S0894731719300021<\/a><\/li><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/https:\/\/doi.org\/10.1016\/j.echo.2019.01.002\" title=\"Follow DOI:https:\/\/doi.org\/10.1016\/j.echo.2019.01.002\" target=\"_blank\">doi:https:\/\/doi.org\/10.1016\/j.echo.2019.01.002<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('69','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Choueib, Saleh;  Pinter, Csaba;  Lasso, Andras;  Fillion-Robin, Jean-Christophe;  Vimort, Jean-Batiste;  Martin, Ken;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/10951\/1095113\/Evaluation-of-3D-slicer-as-a-medical-virtual-reality-visualization\/10.1117\/12.2513053.short\" title=\"https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/10951\/1095113\/Evaluation-of-3D-slicer-as-a-medical-virtual-reality-visualization\/10.1117\/12.2513053.short\" target=\"blank\">Evaluation of 3D slicer as a medical virtual reality visualization platform<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_volume\">vol. 10951, <\/span><span class=\"tp_pub_additional_pages\">pp. 279-286, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_818\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('818','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_818\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('818','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_818\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('818','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_818\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2019f,<br \/>\r\ntitle = {Evaluation of 3D slicer as a medical virtual reality visualization platform},<br \/>\r\nauthor = {Saleh Choueib and Csaba Pinter and Andras Lasso and Jean-Christophe Fillion-Robin and Jean-Batiste Vimort and Ken Martin and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/10951\/1095113\/Evaluation-of-3D-slicer-as-a-medical-virtual-reality-visualization\/10.1117\/12.2513053.short},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-01-01},<br \/>\r\nvolume = {10951},<br \/>\r\npages = {279-286},<br \/>\r\npublisher = {SPIE},<br \/>\r\nabstract = {PURPOSE <br \/>\r\nThere is a lack of open-source or free virtual reality (VR) software that can be utilized for research by medical professionals and researchers. We propose the design and implementation of such software. We also aim to assess the feasibility of using VR as a modality for navigating 3D visualizations of medical scenes. <br \/>\r\nMETHODS <br \/>\r\nTo achieve our goal, we added VR capabilities to the open-source medical image analysis and visualization platform, 3D Slicer. We designed the VR extension by basing the software architecture on VTK\u2019s vtkRenderingOpenVR software module. We extended this module by adding features such as full interactivity between 3D Slicer and the VR extension during VR use, variable volume rendering quality based on user headset motion etc. Furthermore, the VR extension was tested in a feasibility study in which participants were asked to complete specific tasks using bot the \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('818','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_818\" style=\"display:none;\"><div class=\"tp_abstract_entry\">PURPOSE <br \/>\r\nThere is a lack of open-source or free virtual reality (VR) software that can be utilized for research by medical professionals and researchers. We propose the design and implementation of such software. We also aim to assess the feasibility of using VR as a modality for navigating 3D visualizations of medical scenes. <br \/>\r\nMETHODS <br \/>\r\nTo achieve our goal, we added VR capabilities to the open-source medical image analysis and visualization platform, 3D Slicer. We designed the VR extension by basing the software architecture on VTK\u2019s vtkRenderingOpenVR software module. We extended this module by adding features such as full interactivity between 3D Slicer and the VR extension during VR use, variable volume rendering quality based on user headset motion etc. Furthermore, the VR extension was tested in a feasibility study in which participants were asked to complete specific tasks using bot the \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('818','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_818\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/10951\/1095113\/Evaluation-of-3D-slicer-as-a-medical-virtual-reality-visualization\/10.1117\/12.2513053.short\" title=\"https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/10951\/1095113\/[...]\" target=\"_blank\">https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/10951\/1095113\/[...]<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('818','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Asselin, Mark;  Kaufmann, Martin;  Wiercigroch, Julia;  Ungi, Tamas;  Lasso, Andras;  Rudan, John;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\">Navigated real-time molecular analysis in the operating theatre, demonstration of concept <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">SPIE Medical Imaging 2019, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_74\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('74','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_74\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('74','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_74\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{Asselin2019a,<br \/>\r\ntitle = {Navigated real-time molecular analysis in the operating theatre, demonstration of concept},<br \/>\r\nauthor = {Mark Asselin and Martin Kaufmann and Julia Wiercigroch and Tamas Ungi and Andras Lasso and John Rudan and Gabor Fichtinger},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-01-01},<br \/>\r\nurldate = {2019-01-01},<br \/>\r\nbooktitle = {SPIE Medical Imaging 2019},<br \/>\r\nabstract = {&lt;p&gt;&lt;strong&gt;PURPOSE&lt;\/strong&gt;: In the operating theatre surgeons are accustomed to using spatially navigated tools in conjunction with&lt;br \/&gt; <br \/>\r\nstandard clinical imaging during a procedure. This gives them a good idea where they are in the patients\u2019 anatomy but&lt;br \/&gt; <br \/>\r\ndoesn\u2019t provide information about the type of tissue they are dissecting. In this paper we demonstrate an integrated&lt;br \/&gt; <br \/>\r\nsystem consisting of a spatially navigated surgical electrocautery combined with real-time molecular analysis of the&lt;br \/&gt; <br \/>\r\ndissected tissue using mass spectrometry.&lt;br \/&gt; <br \/>\r\n&lt;strong&gt;METHODS&lt;\/strong&gt;: Using the 3D Slicer software package, we have integrated a commercially available neurosurgical&lt;br \/&gt; <br \/>\r\nnavigation system with an intra-operative mass spectrometer (colloquially referred to as the intelligent knife, or iKnife)&lt;br \/&gt; <br \/>\r\nthat analyzes the charged ions in the smoke created during cauterization. We demonstrate this system using a simulated&lt;br \/&gt; <br \/>\r\npatient comprised of an MRI scan from a brain cancer patient deformably registered to a plastic skull model. On the&lt;br \/&gt; <br \/>\r\nskull model we placed porcine and bovine tissues to simulate cancerous and healthy tissue, respectively. We built a&lt;br \/&gt; <br \/>\r\nPCA\/LDA model to distinguish between these tissue types. The tissue classifications were displayed in a spatially&lt;br \/&gt; <br \/>\r\nlocalized manner in the pre-operative imaging, in both 2D and 3D views.&lt;br \/&gt; <br \/>\r\n&lt;strong&gt;RESULTS&lt;\/strong&gt;: We have demonstrated the feasibility of performing spatially navigated intra-operative analysis of tissues by&lt;br \/&gt; <br \/>\r\nmass spectrometry. We show that machine learning can classify our sample tissues, with an average computed&lt;br \/&gt; <br \/>\r\nconfidence of 99.37 % for porcine tissue and 99.36% for bovine tissue.&lt;br \/&gt; <br \/>\r\n&lt;strong&gt;CONCLUSION&lt;\/strong&gt;: In this paper we demonstrate a proof of concept system for navigated intra-operative molecular&lt;br \/&gt; <br \/>\r\nanalysis. This system may enable intra-operative awareness of spatially localized tissue classification during dissection,&lt;br \/&gt; <br \/>\r\ninformation that is especially useful in tumor surgeries where margins may not be visible to the unassisted eye.&lt;br \/&gt; <br \/>\r\n&lt;strong&gt;Keywords&lt;\/strong&gt;: image guided therapy, intra-operative mass spectrometry, iKnife, 3D Slicer, open-source, rapid evaporative&lt;br \/&gt; <br \/>\r\nionization mass spectrometry (REIMS)&lt;\/p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('74','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_74\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;p&gt;&lt;strong&gt;PURPOSE&lt;\/strong&gt;: In the operating theatre surgeons are accustomed to using spatially navigated tools in conjunction with&lt;br \/&gt; <br \/>\r\nstandard clinical imaging during a procedure. This gives them a good idea where they are in the patients\u2019 anatomy but&lt;br \/&gt; <br \/>\r\ndoesn\u2019t provide information about the type of tissue they are dissecting. In this paper we demonstrate an integrated&lt;br \/&gt; <br \/>\r\nsystem consisting of a spatially navigated surgical electrocautery combined with real-time molecular analysis of the&lt;br \/&gt; <br \/>\r\ndissected tissue using mass spectrometry.&lt;br \/&gt; <br \/>\r\n&lt;strong&gt;METHODS&lt;\/strong&gt;: Using the 3D Slicer software package, we have integrated a commercially available neurosurgical&lt;br \/&gt; <br \/>\r\nnavigation system with an intra-operative mass spectrometer (colloquially referred to as the intelligent knife, or iKnife)&lt;br \/&gt; <br \/>\r\nthat analyzes the charged ions in the smoke created during cauterization. We demonstrate this system using a simulated&lt;br \/&gt; <br \/>\r\npatient comprised of an MRI scan from a brain cancer patient deformably registered to a plastic skull model. On the&lt;br \/&gt; <br \/>\r\nskull model we placed porcine and bovine tissues to simulate cancerous and healthy tissue, respectively. We built a&lt;br \/&gt; <br \/>\r\nPCA\/LDA model to distinguish between these tissue types. The tissue classifications were displayed in a spatially&lt;br \/&gt; <br \/>\r\nlocalized manner in the pre-operative imaging, in both 2D and 3D views.&lt;br \/&gt; <br \/>\r\n&lt;strong&gt;RESULTS&lt;\/strong&gt;: We have demonstrated the feasibility of performing spatially navigated intra-operative analysis of tissues by&lt;br \/&gt; <br \/>\r\nmass spectrometry. We show that machine learning can classify our sample tissues, with an average computed&lt;br \/&gt; <br \/>\r\nconfidence of 99.37 % for porcine tissue and 99.36% for bovine tissue.&lt;br \/&gt; <br \/>\r\n&lt;strong&gt;CONCLUSION&lt;\/strong&gt;: In this paper we demonstrate a proof of concept system for navigated intra-operative molecular&lt;br \/&gt; <br \/>\r\nanalysis. This system may enable intra-operative awareness of spatially localized tissue classification during dissection,&lt;br \/&gt; <br \/>\r\ninformation that is especially useful in tumor surgeries where margins may not be visible to the unassisted eye.&lt;br \/&gt; <br \/>\r\n&lt;strong&gt;Keywords&lt;\/strong&gt;: image guided therapy, intra-operative mass spectrometry, iKnife, 3D Slicer, open-source, rapid evaporative&lt;br \/&gt; <br \/>\r\nionization mass spectrometry (REIMS)&lt;\/p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('74','tp_abstract')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Lund, Shaun;  Vaughan, Thomas;  Ungi, Tamas;  Lasso, Andras;  Asselin, Mark;  Yeo, Caitlin;  Engel, C. Jay;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\">Controlling virtual views in navigated breast conserving surgery <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">SPIE Medical Imaging 2019, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_67\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('67','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_67\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('67','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_67\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{Lund2019a,<br \/>\r\ntitle = {Controlling virtual views in navigated breast conserving surgery},<br \/>\r\nauthor = {Shaun Lund and Thomas Vaughan and Tamas Ungi and Andras Lasso and Mark Asselin and Caitlin Yeo and C. Jay Engel and Gabor Fichtinger},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-01-01},<br \/>\r\nurldate = {2019-01-01},<br \/>\r\nbooktitle = {SPIE Medical Imaging 2019},<br \/>\r\nabstract = {&lt;p&gt;&lt;strong&gt;PURPOSE&lt;\/strong&gt;: Lumpectomy is the resection of a tumor in the breast while retaining as much healthy tissue as possible.&lt;br \/&gt; <br \/>\r\nNavigated lumpectomy seeks to improve on the traditional technique by employing computer guidance to achieve the&lt;br \/&gt; <br \/>\r\ncomplete excision of the cancer with optimal retention of healthy tissue. Setting up navigation in the OR relies on the&lt;br \/&gt; <br \/>\r\nmanual interactions of a trained technician to align three-dimensional virtual views to the patient\u2019s physical position&lt;br \/&gt; <br \/>\r\nand maintain their alignment throughout surgery. This work develops automatic alignment tools to improve the&lt;br \/&gt; <br \/>\r\noperability of navigation software for lumpectomies.&lt;br \/&gt; <br \/>\r\n&lt;strong&gt;METHODS&lt;\/strong&gt;: Preset view buttons were developed to refine view setup to a single interaction. These buttons were&lt;br \/&gt; <br \/>\r\ntested by measuring the reduction in setup time and the number of manual interactions avoided through their use. An&lt;br \/&gt; <br \/>\r\nauto-center feature was created to ensure that three-dimensional models of anatomy and instruments were in the center&lt;br \/&gt; <br \/>\r\nof view throughout surgery. Recorded data from 32 lumpectomy cases were replayed and the number of auto-center&lt;br \/&gt; <br \/>\r\nview shifts was counted from the first cautery incision until the completion of the excision of cancerous tissue.&lt;br \/&gt; <br \/>\r\n&lt;strong&gt;RESULTS&lt;\/strong&gt;: View setup can now be performed in a single interaction compared to an average of 13 interactions&lt;br \/&gt; <br \/>\r\n(taking 83 seconds) when performed manually. The auto-center feature was activated an average of 33 times in the&lt;br \/&gt; cases studied (n=32).&lt;br \/&gt; <br \/>\r\n&lt;strong&gt;CONCLUSION&lt;\/strong&gt;: The auto-center feature enhances the operability of the surgical navigation system, reducing the&lt;br \/&gt; <br \/>\r\nnumber of manual interactions required by a technician during the surgery. This feature along with preset camera view&lt;br \/&gt; <br \/>\r\noptions are instrumental in the shift towards a completely surgeon-operable navigated lumpectomy system.&lt;\/p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('67','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_67\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;p&gt;&lt;strong&gt;PURPOSE&lt;\/strong&gt;: Lumpectomy is the resection of a tumor in the breast while retaining as much healthy tissue as possible.&lt;br \/&gt; <br \/>\r\nNavigated lumpectomy seeks to improve on the traditional technique by employing computer guidance to achieve the&lt;br \/&gt; <br \/>\r\ncomplete excision of the cancer with optimal retention of healthy tissue. Setting up navigation in the OR relies on the&lt;br \/&gt; <br \/>\r\nmanual interactions of a trained technician to align three-dimensional virtual views to the patient\u2019s physical position&lt;br \/&gt; <br \/>\r\nand maintain their alignment throughout surgery. This work develops automatic alignment tools to improve the&lt;br \/&gt; <br \/>\r\noperability of navigation software for lumpectomies.&lt;br \/&gt; <br \/>\r\n&lt;strong&gt;METHODS&lt;\/strong&gt;: Preset view buttons were developed to refine view setup to a single interaction. These buttons were&lt;br \/&gt; <br \/>\r\ntested by measuring the reduction in setup time and the number of manual interactions avoided through their use. An&lt;br \/&gt; <br \/>\r\nauto-center feature was created to ensure that three-dimensional models of anatomy and instruments were in the center&lt;br \/&gt; <br \/>\r\nof view throughout surgery. Recorded data from 32 lumpectomy cases were replayed and the number of auto-center&lt;br \/&gt; <br \/>\r\nview shifts was counted from the first cautery incision until the completion of the excision of cancerous tissue.&lt;br \/&gt; <br \/>\r\n&lt;strong&gt;RESULTS&lt;\/strong&gt;: View setup can now be performed in a single interaction compared to an average of 13 interactions&lt;br \/&gt; <br \/>\r\n(taking 83 seconds) when performed manually. The auto-center feature was activated an average of 33 times in the&lt;br \/&gt; cases studied (n=32).&lt;br \/&gt; <br \/>\r\n&lt;strong&gt;CONCLUSION&lt;\/strong&gt;: The auto-center feature enhances the operability of the surgical navigation system, reducing the&lt;br \/&gt; <br \/>\r\nnumber of manual interactions required by a technician during the surgery. This feature along with preset camera view&lt;br \/&gt; <br \/>\r\noptions are instrumental in the shift towards a completely surgeon-operable navigated lumpectomy system.&lt;\/p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('67','tp_abstract')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Baum, Zachary M C;  Ryan, Sarah;  Rae, Emily;  Lasso, Andras;  Ungi, Tamas;  Levy, Ron;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Baum2019b.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Baum2019b.pdf\" target=\"blank\">Assessment of intraoperative neurosurgical planning with the Microsoft HoloLens<\/a> <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">17th Annual Imaging Network Ontario Symposium (ImNO), <\/span><span class=\"tp_pub_additional_publisher\">Imaging Network Ontario (ImNO), <\/span><span class=\"tp_pub_additional_address\">London, Ontario, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_63\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('63','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_63\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('63','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_63\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{Baum2019b,<br \/>\r\ntitle = {Assessment of intraoperative neurosurgical planning with the Microsoft HoloLens},<br \/>\r\nauthor = {Zachary M C Baum and Sarah Ryan and Emily Rae and Andras Lasso and Tamas Ungi and Ron Levy and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Baum2019b.pdf},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-01-01},<br \/>\r\nurldate = {2019-01-01},<br \/>\r\nbooktitle = {17th Annual Imaging Network Ontario Symposium (ImNO)},<br \/>\r\npublisher = {Imaging Network Ontario (ImNO)},<br \/>\r\naddress = {London, Ontario},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('63','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_63\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Baum2019b.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Baum2019b.[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Baum2019b.[...]<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('63','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> House, Rachael;  Kunz, M.;  Valiquette, Chantal;  Lasso, Andras;  Ungi, Tamas;  Rudan, John;  Martou, Glykeria;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/House2019a-manuscript.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/House2019a-manuscript.pdf\" target=\"blank\">Monitoring volume changes for breast reconstruction surgery using three dimensional optical surface scanning<\/a> <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">Canadian Society of Plastic Surgeons (CSPS) Annual Meeting, <\/span><span class=\"tp_pub_additional_address\">St. Johns, Newfoundland, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_73\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('73','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_73\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('73','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_73\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{House2019a,<br \/>\r\ntitle = {Monitoring volume changes for breast reconstruction surgery using three dimensional optical surface scanning},<br \/>\r\nauthor = {Rachael House and M. Kunz and Chantal Valiquette and Andras Lasso and Tamas Ungi and John Rudan and Glykeria Martou and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/House2019a-manuscript.pdf},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-01-01},<br \/>\r\nurldate = {2019-01-01},<br \/>\r\nbooktitle = {Canadian Society of Plastic Surgeons (CSPS) Annual Meeting},<br \/>\r\naddress = {St. Johns, Newfoundland},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('73','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_73\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/House2019a-manuscript.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/House2019a[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/House2019a[...]<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('73','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Laframboise, Jacob;  Ungi, Tamas;  Lasso, Andras;  Asselin, Mark;  Holden, M.;  Tan, Pearl;  Hookey, Lawrence;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Laframboise2019b.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Laframboise2019b.pdf\" target=\"blank\">Quantifying the effect of patient position on the curvature of colons<\/a> <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">17th Annual Imaging Network Ontario Symposium (ImNO), <\/span><span class=\"tp_pub_additional_publisher\">Imaging Network Ontario (ImNO), <\/span><span class=\"tp_pub_additional_address\">London, Ontario, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_77\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('77','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_77\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('77','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_77\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{Laframboise2019b,<br \/>\r\ntitle = {Quantifying the effect of patient position on the curvature of colons},<br \/>\r\nauthor = {Jacob Laframboise and Tamas Ungi and Andras Lasso and Mark Asselin and M. Holden and Pearl Tan and Lawrence Hookey and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Laframboise2019b.pdf},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-01-01},<br \/>\r\nurldate = {2019-01-01},<br \/>\r\nbooktitle = {17th Annual Imaging Network Ontario Symposium (ImNO)},<br \/>\r\npublisher = {Imaging Network Ontario (ImNO)},<br \/>\r\naddress = {London, Ontario},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('77','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_77\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Laframboise2019b.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Laframbois[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Laframbois[...]<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('77','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Nguyen, Alex V;  Lasso, Andras;  Nam, Hannah H;  Faerber, Jennifer;  Aly, Ahmed H;  Pouch, Alison M;  Scanlan, Adam B;  McGowan, Francis X;  Mercer-Rosa, Laura;  Cohen, Meryl S;  Simpson, John;  Fichtinger, Gabor;  Jolley, Matthew A<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0894731719300021\" title=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0894731719300021\" target=\"blank\">Dynamic three-dimensional geometry of the tricuspid valve annulus in hypoplastic left heart syndrome with a Fontan circulation<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Journal of the American Society of Echocardiography, <\/span><span class=\"tp_pub_additional_volume\">vol. 32, <\/span><span class=\"tp_pub_additional_issue\">iss. 5, <\/span><span class=\"tp_pub_additional_pages\">pp. 655-666. e13, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_761\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('761','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_761\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('761','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_761\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('761','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_761\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2019c,<br \/>\r\ntitle = {Dynamic three-dimensional geometry of the tricuspid valve annulus in hypoplastic left heart syndrome with a Fontan circulation},<br \/>\r\nauthor = {Alex V Nguyen and Andras Lasso and Hannah H Nam and Jennifer Faerber and Ahmed H Aly and Alison M Pouch and Adam B Scanlan and Francis X McGowan and Laura Mercer-Rosa and Meryl S Cohen and John Simpson and Gabor Fichtinger and Matthew A Jolley},<br \/>\r\nurl = {https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0894731719300021},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-01-01},<br \/>\r\njournal = {Journal of the American Society of Echocardiography},<br \/>\r\nvolume = {32},<br \/>\r\nissue = {5},<br \/>\r\npages = {655-666. e13},<br \/>\r\npublisher = {Mosby},<br \/>\r\nabstract = {Background <br \/>\r\nTricuspid regurgitation (TR) is a significant contributor to morbidity and mortality in patients with hypoplastic left heart syndrome. The goal of this study was to characterize the dynamic annular motion of the tricuspid valve in patients with HLHS with a Fontan circulation and assess the relation to tricuspid valve function. <br \/>\r\nMethods <br \/>\r\nTricuspid annuli of 48 patients with HLHS with a Fontan circulation were modeled at end-diastole, mid-systole, end-systole, and mid-diastole using transthoracic three-dimensional echocardiography and custom code in 3D Slicer. The angle of the anterior papillary muscle (APM) relative to the annular plane in each systolic phase was also measured. <br \/>\r\nResults <br \/>\r\nImaging was performed 5.0 years (interquartile range, 2\u201311 years) after Fontan operation. The tricuspid annulus varies in shape significantly throughout the cardiac cycle, changing in sphericity (P &lt; .001) but not in annular height \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('761','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_761\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Background <br \/>\r\nTricuspid regurgitation (TR) is a significant contributor to morbidity and mortality in patients with hypoplastic left heart syndrome. The goal of this study was to characterize the dynamic annular motion of the tricuspid valve in patients with HLHS with a Fontan circulation and assess the relation to tricuspid valve function. <br \/>\r\nMethods <br \/>\r\nTricuspid annuli of 48 patients with HLHS with a Fontan circulation were modeled at end-diastole, mid-systole, end-systole, and mid-diastole using transthoracic three-dimensional echocardiography and custom code in 3D Slicer. The angle of the anterior papillary muscle (APM) relative to the annular plane in each systolic phase was also measured. <br \/>\r\nResults <br \/>\r\nImaging was performed 5.0 years (interquartile range, 2\u201311 years) after Fontan operation. The tricuspid annulus varies in shape significantly throughout the cardiac cycle, changing in sphericity (P &lt; .001) but not in annular height \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('761','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_761\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0894731719300021\" title=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0894731719300021\" target=\"_blank\">https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0894731719300021<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('761','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Asselin, Mark;  Kaufmann, Martin;  Wiercigroch, Julia;  Ungi, Tamas;  Lasso, Andras;  Rudan, John;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/10951\/109512C\/Navigated-real-time-molecular-analysis-in-the-operating-theatre\/10.1117\/12.2512586.short\" title=\"https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/10951\/109512C\/Navigated-real-time-molecular-analysis-in-the-operating-theatre\/10.1117\/12.2512586.short\" target=\"blank\">Navigated real-time molecular analysis in the operating theatre: demonstration of concept<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_volume\">vol. 10951, <\/span><span class=\"tp_pub_additional_pages\">pp. 618-624, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_883\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('883','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_883\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('883','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_883\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('883','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_883\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2019h,<br \/>\r\ntitle = {Navigated real-time molecular analysis in the operating theatre: demonstration of concept},<br \/>\r\nauthor = {Mark Asselin and Martin Kaufmann and Julia Wiercigroch and Tamas Ungi and Andras Lasso and John Rudan and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/10951\/109512C\/Navigated-real-time-molecular-analysis-in-the-operating-theatre\/10.1117\/12.2512586.short},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-01-01},<br \/>\r\nvolume = {10951},<br \/>\r\npages = {618-624},<br \/>\r\npublisher = {SPIE},<br \/>\r\nabstract = {PURPOSE <br \/>\r\nIn the operating theatre surgeons are accustomed to using spatially navigated tools in conjunction with standard clinical imaging during a procedure. This gives them a good idea where they are in the patients\u2019 anatomy but doesn\u2019t provide information about the type of tissue they are dissecting. In this paper we demonstrate an integrated system consisting of a spatially navigated surgical electrocautery combined with real-time molecular analysis of the dissected tissue using mass spectrometry. <br \/>\r\nMETHODS <br \/>\r\nUsing the 3D Slicer software package, we have integrated a commercially available neurosurgical navigation system with an intra-operative mass spectrometer (colloquially referred to as the intelligent knife, or iKnife) that analyzes the charged ions in the smoke created during cauterization. We demonstrate this system using a simulated patient comprised of an MRI scan from a brain cancer patient \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('883','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_883\" style=\"display:none;\"><div class=\"tp_abstract_entry\">PURPOSE <br \/>\r\nIn the operating theatre surgeons are accustomed to using spatially navigated tools in conjunction with standard clinical imaging during a procedure. This gives them a good idea where they are in the patients\u2019 anatomy but doesn\u2019t provide information about the type of tissue they are dissecting. In this paper we demonstrate an integrated system consisting of a spatially navigated surgical electrocautery combined with real-time molecular analysis of the dissected tissue using mass spectrometry. <br \/>\r\nMETHODS <br \/>\r\nUsing the 3D Slicer software package, we have integrated a commercially available neurosurgical navigation system with an intra-operative mass spectrometer (colloquially referred to as the intelligent knife, or iKnife) that analyzes the charged ions in the smoke created during cauterization. We demonstrate this system using a simulated patient comprised of an MRI scan from a brain cancer patient \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('883','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_883\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/10951\/109512C\/Navigated-real-time-molecular-analysis-in-the-operating-theatre\/10.1117\/12.2512586.short\" title=\"https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/10951\/109512C\/[...]\" target=\"_blank\">https:\/\/www.spiedigitallibrary.org\/conference-proceedings-of-spie\/10951\/109512C\/[...]<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('883','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Baum, Zachary M C;  Lasso, Andras;  Ryan, Sarah;  Ungi, Tamas;  Rae, Emily;  Zevin, Boris;  Levy, Ron;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/dx.doi.org\/https:\/\/doi.org\/10.1142\/S2424905X19420017\" title=\"Augmented reality training platform for neurosurgical burr hole localization\" target=\"blank\">Augmented reality training platform for neurosurgical burr hole localization<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Journal of Medical Robotics Research, <\/span><span class=\"tp_pub_additional_volume\">vol. 4, <\/span><span class=\"tp_pub_additional_number\">no. 3-4, <\/span><span class=\"tp_pub_additional_pages\">pp. 1942001-1 - 1942001-13, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_64\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('64','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_64\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('64','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_64\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('64','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_64\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{Baum2020,<br \/>\r\ntitle = {Augmented reality training platform for neurosurgical burr hole localization},<br \/>\r\nauthor = {Zachary M C Baum and Andras Lasso and Sarah Ryan and Tamas Ungi and Emily Rae and Boris Zevin and Ron Levy and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Baum2020a.pdf},<br \/>\r\ndoi = {https:\/\/doi.org\/10.1142\/S2424905X19420017},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-01-01},<br \/>\r\nurldate = {2019-01-01},<br \/>\r\njournal = {Journal of Medical Robotics Research},<br \/>\r\nvolume = {4},<br \/>\r\nnumber = {3-4},<br \/>\r\npages = {1942001-1 - 1942001-13},<br \/>\r\nabstract = {&lt;p&gt;Augmented reality (AR) is used in neurosurgery to visualize lesions and plan procedures pre-operatively and intra-operatively, though its use has not been widely adopted in simulation-based neurosurgical training for the same tasks. This work defines metrics to determine performance in drill position and angle identification for neurosurgical training. The metrics were validated intra-operatively and in a simulated training environment, demonstrating that trainees identify drill position and angle faster and more accurately with AR compared to standard techniques. Training using AR and the proposed metrics stands to add value to neurosurgical curricula development.&lt;\/p&gt;},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('64','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_64\" style=\"display:none;\"><div class=\"tp_abstract_entry\">&lt;p&gt;Augmented reality (AR) is used in neurosurgery to visualize lesions and plan procedures pre-operatively and intra-operatively, though its use has not been widely adopted in simulation-based neurosurgical training for the same tasks. This work defines metrics to determine performance in drill position and angle identification for neurosurgical training. The metrics were validated intra-operatively and in a simulated training environment, demonstrating that trainees identify drill position and angle faster and more accurately with AR compared to standard techniques. Training using AR and the proposed metrics stands to add value to neurosurgical curricula development.&lt;\/p&gt;<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('64','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_64\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Baum2020a.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Baum2020a.[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Baum2020a.[...]<\/a><\/li><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/https:\/\/doi.org\/10.1142\/S2424905X19420017\" title=\"Follow DOI:https:\/\/doi.org\/10.1142\/S2424905X19420017\" target=\"_blank\">doi:https:\/\/doi.org\/10.1142\/S2424905X19420017<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('64','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Perrin, Sydney;  Baum, Zachary M C;  Asselin, Mark;  Underwood, Grace;  Choueib, Saleh;  Lia, H.;  Ungi, Tamas;  Lasso, Andras;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Perrin2019a.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Perrin2019a.pdf\" target=\"blank\">Reproducibility of freehand calibrations for ultrasound-guided needle navigation<\/a> <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">SPIE Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling, <\/span><span class=\"tp_pub_additional_volume\">vol. 10951, <\/span><span class=\"tp_pub_additional_address\">San Diego, California, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_78\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('78','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_78\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('78','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_78\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{Perrin2019a,<br \/>\r\ntitle = {Reproducibility of freehand calibrations for ultrasound-guided needle navigation},<br \/>\r\nauthor = {Sydney Perrin and Zachary M C Baum and Mark Asselin and Grace Underwood and Saleh Choueib and H. Lia and Tamas Ungi and Andras Lasso and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Perrin2019a.pdf},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-01-01},<br \/>\r\nurldate = {2019-01-01},<br \/>\r\nbooktitle = {SPIE Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling},<br \/>\r\nvolume = {10951},<br \/>\r\naddress = {San Diego, California},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('78','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_78\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Perrin2019a.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Perrin2019[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Perrin2019[...]<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('78','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Pinter, Csaba;  Lasso, Andras;  Fichtinger, Gabor<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0169260718313038\" title=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0169260718313038\" target=\"blank\">Polymorph segmentation representation for medical image computing<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Computer methods and programs in biomedicine, <\/span><span class=\"tp_pub_additional_volume\">vol. 171, <\/span><span class=\"tp_pub_additional_pages\">pp. 19-26, <\/span><span class=\"tp_pub_additional_year\">2019<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_704\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('704','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_704\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('704','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_704\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('704','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_704\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2019b,<br \/>\r\ntitle = {Polymorph segmentation representation for medical image computing},<br \/>\r\nauthor = {Csaba Pinter and Andras Lasso and Gabor Fichtinger},<br \/>\r\nurl = {https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0169260718313038},<br \/>\r\nyear  = {2019},<br \/>\r\ndate = {2019-01-01},<br \/>\r\njournal = {Computer methods and programs in biomedicine},<br \/>\r\nvolume = {171},<br \/>\r\npages = {19-26},<br \/>\r\npublisher = {Elsevier},<br \/>\r\nabstract = {Background and objective <br \/>\r\nSegmentation is a ubiquitous operation in medical image computing. Various data representations can describe segmentation results, such as labelmap volumes or surface models. Conversions between them are often required, which typically include complex data processing steps. We identified four challenges related to managing multiple representations: conversion method selection, data provenance, data consistency, and coherence of in-memory objects. <br \/>\r\nMethods <br \/>\r\nA complex data container preserves identity and provenance of the contained representations and ensures data coherence. Conversions are executed automatically on-demand. A graph containing the implemented conversion algorithms determines each execution, ensuring consistency between various representations. The design and implementation of a software library are proposed, in order to provide a readily usable \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('704','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_704\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Background and objective <br \/>\r\nSegmentation is a ubiquitous operation in medical image computing. Various data representations can describe segmentation results, such as labelmap volumes or surface models. Conversions between them are often required, which typically include complex data processing steps. We identified four challenges related to managing multiple representations: conversion method selection, data provenance, data consistency, and coherence of in-memory objects. <br \/>\r\nMethods <br \/>\r\nA complex data container preserves identity and provenance of the contained representations and ensures data coherence. Conversions are executed automatically on-demand. A graph containing the implemented conversion algorithms determines each execution, ensuring consistency between various representations. The design and implementation of a software library are proposed, in order to provide a readily usable \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('704','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_704\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0169260718313038\" title=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0169260718313038\" target=\"_blank\">https:\/\/www.sciencedirect.com\/science\/article\/pii\/S0169260718313038<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('704','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><\/div><div class=\"tablenav\"><div class=\"tablenav-pages\"><span class=\"displaying-num\">264 entries<\/span> <a class=\"page-numbers button disabled\">&laquo;<\/a> <a class=\"page-numbers button disabled\">&lsaquo;<\/a> 1 of 6 <a href=\"https:\/\/labs.cs.queensu.ca\/perklab\/members\/andras-lasso\/?limit=2&amp;tgid=&amp;yr=&amp;type=&amp;usr=&amp;auth=&amp;tsr=#tppubs\" title=\"next page\" class=\"page-numbers button\">&rsaquo;<\/a> <a href=\"https:\/\/labs.cs.queensu.ca\/perklab\/members\/andras-lasso\/?limit=6&amp;tgid=&amp;yr=&amp;type=&amp;usr=&amp;auth=&amp;tsr=#tppubs\" title=\"last page\" class=\"page-numbers button\">&raquo;<\/a> <\/div><\/div><\/div>\n\n<\/div>\n","protected":false},"featured_media":315,"template":"","meta":{"_acf_changed":false,"_uag_custom_page_level_css":"","site-sidebar-layout":"default","site-content-layout":"","ast-site-content-layout":"default","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","ast-disable-related-posts":"","theme-transparent-header-meta":"","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"default","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center 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Sewpersaud","author_link":"https:\/\/labs.cs.queensu.ca\/perklab\/author\/"},"uagb_comment_info":0,"uagb_excerpt":"Andras\u00a0Lasso Senior Researcher School of Computing Queen&#8217;s University lasso@queensu.ca Biography Andras Lasso graduated at the Budapest University of Technology, Hungary (MSc in Electrical Engineering, 2000; PhD, 2011). 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