{"id":2352,"date":"2024-03-09T06:01:57","date_gmt":"2024-03-09T06:01:57","guid":{"rendered":"https:\/\/labs.cs.queensu.ca\/perklab\/members\/johnathan-boisvert\/"},"modified":"2024-03-09T06:01:57","modified_gmt":"2024-03-09T06:01:57","slug":"johnathan-boisvert","status":"publish","type":"qsc_member","link":"https:\/\/labs.cs.queensu.ca\/perklab\/members\/johnathan-boisvert\/","title":{"rendered":"Johnathan Boisvert"},"content":{"rendered":"<div class=\"wp-block-columns is-layout-flex wp-block-columns-is-layout-flex qsc-member-single-core-info-container\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow qsc-member-single-photo-column\">\n\t\t<img decoding=\"async\" src=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/plugins\/qsc-members\/\/images\/missing-image-placeholder.png\" class=\"qsc-member-single-photo\"\/>\n\t<\/div>\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow qsc-member-single-info-column\">\n<div class=\"qsc-member-name\">\n<h1>Johnathan Boisvert<\/h1>\n<\/div>\n<div class=\"qsc-member-position\">Postdoctoral Fellow<\/div>\n<div class=\"qsc-member-department\">School of Computing<\/div>\n<div class=\"qsc-member-organization\">Queen&#8217;s University<\/div>\n<div class=\"qsc-member-date-range\">Member from <em>2007<\/em> to <em>2008<\/em><\/div>\n<div class=\"qsc-member-contact\">\n<div class=\"qsc-member-socials\">\n\t\t\t<\/div>\n<\/p><\/div>\n<\/p><\/div>\n<\/div>\n<div class=\"qsc-member-bio\">\n<div class=\"teachpress_pub_list\"><form name=\"tppublistform\" method=\"get\"><a name=\"tppubs\" id=\"tppubs\"><\/a><\/form><div class=\"teachpress_publication_list\"><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Gill, Sean;  Abolmaesumi, Purang;  Fichtinger, Gabor;  Boisvert, Jonathan;  Pichora, David;  Borshneck, Dan;  Mousavi, Parvin<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S1361841510001003\" title=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S1361841510001003\" target=\"blank\">Biomechanically constrained groupwise ultrasound to CT registration of the lumbar spine<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_journal\">Medical image analysis, <\/span><span class=\"tp_pub_additional_volume\">vol. 16, <\/span><span class=\"tp_pub_additional_issue\">iss. 3, <\/span><span class=\"tp_pub_additional_pages\">pp. 662-674, <\/span><span class=\"tp_pub_additional_year\">2012<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_697\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('697','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_697\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('697','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_697\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('697','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_697\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2012b,<br \/>\r\ntitle = {Biomechanically constrained groupwise ultrasound to CT registration of the lumbar spine},<br \/>\r\nauthor = {Sean Gill and Purang Abolmaesumi and Gabor Fichtinger and Jonathan Boisvert and David Pichora and Dan Borshneck and Parvin Mousavi},<br \/>\r\nurl = {https:\/\/www.sciencedirect.com\/science\/article\/pii\/S1361841510001003},<br \/>\r\nyear  = {2012},<br \/>\r\ndate = {2012-01-01},<br \/>\r\njournal = {Medical image analysis},<br \/>\r\nvolume = {16},<br \/>\r\nissue = {3},<br \/>\r\npages = {662-674},<br \/>\r\npublisher = {Elsevier},<br \/>\r\nabstract = {We present a groupwise US to CT registration algorithm for guiding percutaneous spinal interventions. In addition, we introduce a comprehensive validation scheme that accounts for changes in the curvature of the spine between preoperative and intraoperative imaging. In our registration methodology, each vertebra in CT is treated as a sub-volume and transformed individually. A biomechanical model is used to constrain the displacement of the vertebrae relative to one another. The sub-volumes are then reconstructed into a single volume. During each iteration of registration, an US image is simulated from the reconstructed CT volume and an intensity-based similarity metric is calculated with the real US image. Validation studies are performed on CT and US images from a sheep cadaver, five patient-based phantoms designed to preserve realistic curvatures of the spine and a sixth patient-based phantom where \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('697','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_697\" style=\"display:none;\"><div class=\"tp_abstract_entry\">We present a groupwise US to CT registration algorithm for guiding percutaneous spinal interventions. In addition, we introduce a comprehensive validation scheme that accounts for changes in the curvature of the spine between preoperative and intraoperative imaging. In our registration methodology, each vertebra in CT is treated as a sub-volume and transformed individually. A biomechanical model is used to constrain the displacement of the vertebrae relative to one another. The sub-volumes are then reconstructed into a single volume. During each iteration of registration, an US image is simulated from the reconstructed CT volume and an intensity-based similarity metric is calculated with the real US image. Validation studies are performed on CT and US images from a sheep cadaver, five patient-based phantoms designed to preserve realistic curvatures of the spine and a sixth patient-based phantom where \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('697','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_697\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S1361841510001003\" title=\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S1361841510001003\" target=\"_blank\">https:\/\/www.sciencedirect.com\/science\/article\/pii\/S1361841510001003<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('697','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Khallaghi, Siavash;  Abolmaesumi, Purang;  Gong, Ren Hui;  Chen, Elvis C. S.;  Gill, Sean;  Boisvert, Jonathan;  Pichora, David R;  Borschneck, Daniel P.;  Fichtinger, Gabor;  Mousavi, Parvin<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/dx.doi.org\/10.1117\/12.878377\" title=\"GPU accelerated registration of a statistical shape model of the lumbar spine to 3D ultrasound images\" target=\"blank\">GPU accelerated registration of a statistical shape model of the lumbar spine to 3D ultrasound images<\/a> <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">SPIE Medical Imaging, <\/span><span class=\"tp_pub_additional_volume\">vol. 7964, <\/span><span class=\"tp_pub_additional_number\">no. 1, <\/span><span class=\"tp_pub_additional_organization\">SPIE <\/span><span class=\"tp_pub_additional_publisher\">SPIE, <\/span><span class=\"tp_pub_additional_address\">Lake Buena Vista, Florida, USA, <\/span><span class=\"tp_pub_additional_year\">2011<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_resource_link\"><a id=\"tp_links_sh_312\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('312','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_312\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('312','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_312\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{Khallaghi2011,<br \/>\r\ntitle = {GPU accelerated registration of a statistical shape model of the lumbar spine to 3D ultrasound images},<br \/>\r\nauthor = {Siavash Khallaghi and Purang Abolmaesumi and Ren Hui Gong and Elvis C. S. Chen and Sean Gill and Jonathan Boisvert and David R Pichora and Daniel P. Borschneck and Gabor Fichtinger and Parvin Mousavi},<br \/>\r\nurl = {http:\/\/link.aip.org\/link\/?PSI\/7964\/79642W\/1<br \/>\r\nhttps:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Khallaghi2011.pdf<br \/>\r\nhttps:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Khallaghi2010.pdf},<br \/>\r\ndoi = {10.1117\/12.878377},<br \/>\r\nyear  = {2011},<br \/>\r\ndate = {2011-03-01},<br \/>\r\nurldate = {2011-03-01},<br \/>\r\nbooktitle = {SPIE Medical Imaging},<br \/>\r\nvolume = {7964},<br \/>\r\nnumber = {1},<br \/>\r\npages = {79642W},<br \/>\r\npublisher = {SPIE},<br \/>\r\naddress = {Lake Buena Vista, Florida, USA},<br \/>\r\norganization = {SPIE},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('312','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_312\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"http:\/\/link.aip.org\/link\/?PSI\/7964\/79642W\/1\" title=\"http:\/\/link.aip.org\/link\/?PSI\/7964\/79642W\/1\" target=\"_blank\">http:\/\/link.aip.org\/link\/?PSI\/7964\/79642W\/1<\/a><\/li><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Khallaghi2011.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Khallaghi2[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Khallaghi2[...]<\/a><\/li><li><i class=\"fas fa-file-pdf\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Khallaghi2010.pdf\" title=\"https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Khallaghi2[...]\" target=\"_blank\">https:\/\/labs.cs.queensu.ca\/perklab\/wp-content\/uploads\/sites\/3\/2024\/02\/Khallaghi2[...]<\/a><\/li><li><i class=\"ai ai-doi\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/dx.doi.org\/10.1117\/12.878377\" title=\"Follow DOI:10.1117\/12.878377\" target=\"_blank\">doi:10.1117\/12.878377<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('312','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Khallaghi, Siavash;  Mousavi, Parvin;  Gong, Ren Hui;  Gill, Sean;  Boisvert, Jonathan;  Fichtinger, Gabor;  Pichora, David R;  Borschneck, Daniel P.;  Abolmaesumi, Purang<\/p><p class=\"tp_pub_title\">Registration of a Statistical Shape Model of the Lumbar Spine to 3D Ultrasound Images <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2010, <\/span><span class=\"tp_pub_additional_organization\">Springer <\/span><span class=\"tp_pub_additional_publisher\">Springer, <\/span><span class=\"tp_pub_additional_address\">Beijing, China, <\/span><span class=\"tp_pub_additional_year\">2010<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_362\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('362','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_362\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{Khallaghi2010,<br \/>\r\ntitle = {Registration of a Statistical Shape Model of the Lumbar Spine to 3D Ultrasound Images},<br \/>\r\nauthor = {Siavash Khallaghi and Parvin Mousavi and Ren Hui Gong and Sean Gill and Jonathan Boisvert and Gabor Fichtinger and David R Pichora and Daniel P. Borschneck and Purang Abolmaesumi},<br \/>\r\nyear  = {2010},<br \/>\r\ndate = {2010-01-01},<br \/>\r\nbooktitle = {Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2010},<br \/>\r\npages = {68-75},<br \/>\r\npublisher = {Springer},<br \/>\r\naddress = {Beijing, China},<br \/>\r\norganization = {Springer},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('362','tp_bibtex')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Khallaghi, Siavash;  Mousavi, Parvin;  Gong, Ren Hui;  Gill, Sean;  Boisvert, Jonathan;  Fichtinger, Gabor;  Pichora, David;  Borschneck, Dan;  Abolmaesumi, Purang<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/link.springer.com\/chapter\/10.1007\/978-3-642-15745-5_9\" title=\"https:\/\/link.springer.com\/chapter\/10.1007\/978-3-642-15745-5_9\" target=\"blank\">Registration of a statistical shape model of the lumbar spine to 3D ultrasound images<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_pages\">pp. 68-75, <\/span><span class=\"tp_pub_additional_year\">2010<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_740\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('740','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_740\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('740','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_740\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('740','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_740\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2010g,<br \/>\r\ntitle = {Registration of a statistical shape model of the lumbar spine to 3D ultrasound images},<br \/>\r\nauthor = {Siavash Khallaghi and Parvin Mousavi and Ren Hui Gong and Sean Gill and Jonathan Boisvert and Gabor Fichtinger and David Pichora and Dan Borschneck and Purang Abolmaesumi},<br \/>\r\nurl = {https:\/\/link.springer.com\/chapter\/10.1007\/978-3-642-15745-5_9},<br \/>\r\nyear  = {2010},<br \/>\r\ndate = {2010-01-01},<br \/>\r\npages = {68-75},<br \/>\r\npublisher = {Springer Berlin Heidelberg},<br \/>\r\nabstract = {Motivation: Spinal needle injections are technically demanding procedures. The use of ultrasound image guidance without prior CT and MR imagery promises to improve the efficacy and safety of these procedures in an affordable manner. Methodology: We propose to create a statistical shape model of the lumbar spine and warp this atlas to patient-specific ultrasound images during the needle placement procedure. From CT image volumes of 35 patients, statistical shape model of the L3 vertebra is built, including mean shape and main modes of variation. This shape model is registered to the ultrasound data by simultaneously optimizing the parameters of the model and its relative pose. Ground-truth data was established by printing 3D anatomical models of 3 patients using a rapid prototyping. CT and ultrasound data of these models were registered using fiducial markers. Results: Pairwise \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('740','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_740\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Motivation: Spinal needle injections are technically demanding procedures. The use of ultrasound image guidance without prior CT and MR imagery promises to improve the efficacy and safety of these procedures in an affordable manner. Methodology: We propose to create a statistical shape model of the lumbar spine and warp this atlas to patient-specific ultrasound images during the needle placement procedure. From CT image volumes of 35 patients, statistical shape model of the L3 vertebra is built, including mean shape and main modes of variation. This shape model is registered to the ultrasound data by simultaneously optimizing the parameters of the model and its relative pose. Ground-truth data was established by printing 3D anatomical models of 3 patients using a rapid prototyping. CT and ultrasound data of these models were registered using fiducial markers. Results: Pairwise \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('740','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_740\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/link.springer.com\/chapter\/10.1007\/978-3-642-15745-5_9\" title=\"https:\/\/link.springer.com\/chapter\/10.1007\/978-3-642-15745-5_9\" target=\"_blank\">https:\/\/link.springer.com\/chapter\/10.1007\/978-3-642-15745-5_9<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('740','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_article\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Gill, Sean;  Mousavi, Parvin;  Fichtinger, Gabor;  Chen, Elvis;  Boisvert, Jonathan;  Pichora, David;  Abolmaesumi, Purang<\/p><p class=\"tp_pub_title\"><a class=\"tp_title_link\" href=\"https:\/\/link.springer.com\/chapter\/10.1007\/978-3-642-04268-3_99\" title=\"https:\/\/link.springer.com\/chapter\/10.1007\/978-3-642-04268-3_99\" target=\"blank\">Biomechanically constrained groupwise US to CT registration of the lumbar spine<\/a> <span class=\"tp_pub_type tp_  article\">Journal Article<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_in\">In: <\/span><span class=\"tp_pub_additional_pages\">pp. 803-810, <\/span><span class=\"tp_pub_additional_year\">2009<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_abstract_link\"><a id=\"tp_abstract_sh_785\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('785','tp_abstract')\" title=\"Show abstract\" style=\"cursor:pointer;\">Abstract<\/a><\/span> | <span class=\"tp_resource_link\"><a id=\"tp_links_sh_785\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('785','tp_links')\" title=\"Show links and resources\" style=\"cursor:pointer;\">Links<\/a><\/span> | <span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_785\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('785','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_785\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@article{fichtinger2009g,<br \/>\r\ntitle = {Biomechanically constrained groupwise US to CT registration of the lumbar spine},<br \/>\r\nauthor = {Sean Gill and Parvin Mousavi and Gabor Fichtinger and Elvis Chen and Jonathan Boisvert and David Pichora and Purang Abolmaesumi},<br \/>\r\nurl = {https:\/\/link.springer.com\/chapter\/10.1007\/978-3-642-04268-3_99},<br \/>\r\nyear  = {2009},<br \/>\r\ndate = {2009-01-01},<br \/>\r\npages = {803-810},<br \/>\r\npublisher = {Springer Berlin Heidelberg},<br \/>\r\nabstract = {Registration of intraoperative ultrasound (US) with preoperative computed tomography (CT) data for interventional guidance is a subject of immense interest, particularly for percutaneous spinal injections. We propose a biomechanically constrained group-wise registration of US to CT images of the lumbar spine. Each vertebra in CT is treated as a sub-volume and transformed individually. The sub-volumes are then reconstructed into a single volume. The algorithm simulates an US image from the CT data at each iteration of the registration. This simulated US image is used to calculate an intensity based similarity metric with the real US image. A biomechanical model is used to constrain the displacement of the vertebrae relative to one another. Covariance Matrix Adaption - Evolution Strategy (CMA-ES) is utilized as the optimization strategy. Validation is performed on CT and US images from a phantom \u2026},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {article}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('785','tp_bibtex')\">Close<\/a><\/p><\/div><div class=\"tp_abstract\" id=\"tp_abstract_785\" style=\"display:none;\"><div class=\"tp_abstract_entry\">Registration of intraoperative ultrasound (US) with preoperative computed tomography (CT) data for interventional guidance is a subject of immense interest, particularly for percutaneous spinal injections. We propose a biomechanically constrained group-wise registration of US to CT images of the lumbar spine. Each vertebra in CT is treated as a sub-volume and transformed individually. The sub-volumes are then reconstructed into a single volume. The algorithm simulates an US image from the CT data at each iteration of the registration. This simulated US image is used to calculate an intensity based similarity metric with the real US image. A biomechanical model is used to constrain the displacement of the vertebrae relative to one another. Covariance Matrix Adaption - Evolution Strategy (CMA-ES) is utilized as the optimization strategy. Validation is performed on CT and US images from a phantom \u2026<\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('785','tp_abstract')\">Close<\/a><\/p><\/div><div class=\"tp_links\" id=\"tp_links_785\" style=\"display:none;\"><div class=\"tp_links_entry\"><ul class=\"tp_pub_list\"><li><i class=\"fas fa-globe\"><\/i><a class=\"tp_pub_list\" href=\"https:\/\/link.springer.com\/chapter\/10.1007\/978-3-642-04268-3_99\" title=\"https:\/\/link.springer.com\/chapter\/10.1007\/978-3-642-04268-3_99\" target=\"_blank\">https:\/\/link.springer.com\/chapter\/10.1007\/978-3-642-04268-3_99<\/a><\/li><\/ul><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('785','tp_links')\">Close<\/a><\/p><\/div><\/div><\/div><div class=\"tp_publication tp_publication_conference\"><div class=\"tp_pub_info\"><p class=\"tp_pub_author\"> Boisvert, Jonathan;  Gobbi, David;  Vikal, Siddharth;  Rohling, Robert;  Fichtinger, Gabor;  Abolmaesumi, Purang<\/p><p class=\"tp_pub_title\">An open-source solution for interactive acquisition, processing and transfer of interventional ultrasound images <span class=\"tp_pub_type tp_  conference\">Conference<\/span> <\/p><p class=\"tp_pub_additional\"><span class=\"tp_pub_additional_booktitle\">Workshop on Systems and Architectures for Computer Assisted Interventions, held in conjunction with the 11th International Conference on Medical Image Computing and Computer Assisted Intervention, <\/span><span class=\"tp_pub_additional_year\">2008<\/span>.<\/p><p class=\"tp_pub_menu\"><span class=\"tp_bibtex_link\"><a id=\"tp_bibtex_sh_412\" class=\"tp_show\" onclick=\"teachpress_pub_showhide('412','tp_bibtex')\" title=\"Show BibTeX entry\" style=\"cursor:pointer;\">BibTeX<\/a><\/span><\/p><div class=\"tp_bibtex\" id=\"tp_bibtex_412\" style=\"display:none;\"><div class=\"tp_bibtex_entry\"><pre>@conference{Boisvert2008,<br \/>\r\ntitle = {An open-source solution for interactive acquisition, processing and transfer of interventional ultrasound images},<br \/>\r\nauthor = {Jonathan Boisvert and David Gobbi and Siddharth Vikal and Robert Rohling and Gabor Fichtinger and Purang Abolmaesumi},<br \/>\r\nyear  = {2008},<br \/>\r\ndate = {2008-01-01},<br \/>\r\nurldate = {2008-01-01},<br \/>\r\nbooktitle = {Workshop on Systems and Architectures for Computer Assisted Interventions, held in conjunction with the 11th International Conference on Medical Image Computing and Computer Assisted Intervention},<br \/>\r\nkeywords = {},<br \/>\r\npubstate = {published},<br \/>\r\ntppubtype = {conference}<br \/>\r\n}<br \/>\r\n<\/pre><\/div><p class=\"tp_close_menu\"><a class=\"tp_close\" onclick=\"teachpress_pub_showhide('412','tp_bibtex')\">Close<\/a><\/p><\/div><\/div><\/div><\/div><\/div><\/div>\n","protected":false},"featured_media":0,"template":"","meta":{"_acf_changed":false,"_uag_custom_page_level_css":"","site-sidebar-layout":"default","site-content-layout":"","ast-site-content-layout":"default","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","ast-disable-related-posts":"","theme-transparent-header-meta":"","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"default","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center 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Queen&#8217;s University Member from 2007 to 2008 Gill, Sean; Abolmaesumi, Purang; Fichtinger, Gabor; Boisvert, Jonathan; Pichora, David; Borshneck, Dan; Mousavi, ParvinBiomechanically constrained groupwise ultrasound to CT registration of the lumbar spine Journal Article In: Medical image analysis, vol. 16, iss. 3, pp. 662-674, 2012.Abstract | Links | BibTeX@article{fichtinger2012b,&hellip;","_links":{"self":[{"href":"https:\/\/labs.cs.queensu.ca\/perklab\/wp-json\/wp\/v2\/qsc_member\/2352","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/labs.cs.queensu.ca\/perklab\/wp-json\/wp\/v2\/qsc_member"}],"about":[{"href":"https:\/\/labs.cs.queensu.ca\/perklab\/wp-json\/wp\/v2\/types\/qsc_member"}],"version-history":[{"count":0,"href":"https:\/\/labs.cs.queensu.ca\/perklab\/wp-json\/wp\/v2\/qsc_member\/2352\/revisions"}],"wp:attachment":[{"href":"https:\/\/labs.cs.queensu.ca\/perklab\/wp-json\/wp\/v2\/media?parent=2352"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}