@article{Jain2005e,

title = {Matching and reconstruction of brachytherapy seeds using the Hungarian algorithm (MARSHAL)},

author = {Ameet K. Jain and Yu Zhou and Tabish Mustufa and E. Clif Burdette and Gregory Chirikjian and Gabor Fichtinger},

url = {https://labs.cs.queensu.ca/perklab/wp-content/uploads/sites/3/2024/02/Jain2005d.pdf},

year  = {2005},

date = {2005-11-01},

urldate = {2005-11-01},

journal = {Journal of Medical Physics},

volume = {32},

number = {11},

pages = {3475–3492},

abstract = {<p>Intraoperative dosimetric quality assurance in prostate brachytherapy critically depends on discerning the three-dimensional (3D) locations of implanted seeds The ability to reconstruct the implanted seeds intraoperatively will allow us to make immediate provisions for dosimetric deviations from the optimal implant plan A method for seed reconstruction from segmented C-arm fluoroscopy images is proposed The 3D coordinates of the implanted seeds can be calculated upon resolving the correspondence of seeds in multiple x-ray images We formalize seed-matching as a combinatorial optimization problem, which has salient features: (a) extensively studied solutions by the computer science community; (b) proof for the nonexistence of any polynomial time exact algorithm;, (c) a practical pseudo-polynomial algorithm that mostly runs in O(N3) time using any number of images We prove that two images are insufficient to correctly match the seeds, while a third image renders the matching problem to be of nonpolynomial complexity We utilize the special structure of the problem, propose a pseudopolynomial time algorithm Using three presegmented images, matching, reconstruction of brachytherapy seeds using the Hungarian algorithm achieved complete matching in simulation experiments;, 98 5% in phantom experiments 3D reconstruction error for correctly matched seeds has a mean of 0 63 mm, and 0 9 mm for incorrectly matched seeds The maximum seed reconstruction error in each implant was typically around 1 32 mm Both on synthetic data, in phantom experiments, matching rate, reconstruction error achieved using presegmented images was found to be sufficient for prostate brachytherapy The algorithm is extendable to deal with arbitrary number of images without any loss in speed or accuracy The algorithm is sufficiently generic to provide a practical solution to any correspondence problem, across different imaging modalities, features</p>},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Jain2005a,

title = {FTRAC},

author = {Ameet K. Jain and Tabish Mustufa and Yu Zhou and E. Clif Burdette and Gregory Chirikjian and Gabor Fichtinger},

year  = {2005},

date = {2005-10-01},

journal = {Journal of Medical Physics},

volume = {32},

number = {10},

pages = {3185–3198},

abstract = {<p>C-arm fluoroscopy is ubiquitous in contemporary surgery, but it lacks the ability to accurately reconstruct three-dimensional (3D) information A major obstacle in fluoroscopic reconstruction is discerning the pose of the x-ray image, in 3D space Optical/magnetic trackers tend to be prohibitively expensive, intrusive, cumbersome in many applications We present single-image-based fluoroscope tracking (FTRAC) with the use of an external radiographic fiducial consisting of a mathematically optimized set of ellipses, lines, and points This is an improvement over contemporary fiducials, which use only points The fiducial encodes six degrees of freedom in a single image by creating a unique view from any direction A nonlinear optimizer can rapidly compute the pose of the fiducial using this image The current embodiment has salient attributes: small dimensions (3 x 3 x 5 cm); need not be close to the anatomy of interest;, accurately segmentable We tested the fiducial, the pose recovery method on synthetic data, also experimentally on a precisely machined mechanical phantom Pose recovery in phantom experiments had an accuracy of 0 56 mm in translation, 0 33 degrees in orientation Object reconstruction had a mean error of 0 53 mm with 0 16 mm STD The method offers accuracies similar to commercial tracking systems, and appears to be sufficiently robust for intraoperative quantitative C-arm fluoroscopy Simulation experiments indicate that the size can be further reduced to 1 x 1 X 2 cm, with only a marginal drop in accuracy</p>},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Jain2005,

title = {C-arm calibration-is it really necessary?},

author = {Ameet K. Jain and Ryan Kon and Yu Zhou and Gabor Fichtinger},

url = {https://labs.cs.queensu.ca/perklab/wp-content/uploads/sites/3/2024/02/Jain2005c.pdf},

year  = {2005},

date = {2005-01-01},

urldate = {2005-01-01},

journal = {Medical image computing and computer-assisted intervention (MICCAI)},

volume = {8},

number = {Pt 1},

pages = {639–646},

abstract = {<p>C-arm fluoroscopy is modelled as a perspective projection, the parameters of which are estimated through a calibration procedure It has been universally accepted that precise intra-procedural calibration is a prerequisite for accurate quantitative C-arm fluoroscopy guidance Calibration, however, significantly adds to system complexity, which is a major impediment to clinical practice We challenge the status quo by questioning the assumption that precise intra-procedural calibration is really necessary We derived theoretical bounds for the sensitivity of 3D measurements to mis-calibration Experimental results corroborated the theory in that mis-calibration in the focal spot by as much as 50 mm still allows for tracking with an accuracy of 0 5 mm in translation, 0 65 degrees in rotation, and such mis-calibration does not impose any additional error on the reconstruction of small objects</p>},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Jain2005c,

title = {Towards Intra-Operative Dosimetry in Prostate Brachytherapy},

author = {Ameet K. Jain and Yu Zhou and Christopher Kennedy and Tabish Mustufa and E. Clif Burdette and Gregory Chirikjian and Gabor Fichtinger},

url = {http://link aip org/link/?MPH/32/2159/1

https://labs.cs.queensu.ca/perklab/wp-content/uploads/sites/3/2024/02/Jain2005c.pdf},

doi = {10 1118/1 1998646},

year  = {2005},

date = {2005-01-01},

urldate = {2005-01-01},

journal = {Journal of Medical Physics},

volume = {32},

number = {6},

pages = {2159-2159},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{fichtinger2005c,

title = {FTRAC—A robust fluoroscope tracking fiducial},

author = {Ameet Kumar Jain and Tabish Mustafa and Yu Zhou and Clif Burdette and Gregory S Chirikjian and Gabor Fichtinger},

url = {https://aapm.onlinelibrary.wiley.com/doi/abs/10.1118/1.2047782},

year  = {2005},

date = {2005-01-01},

journal = {Medical physics},

volume = {32},

issue = {10},

pages = {3185-3198},

publisher = {American Association of Physicists in Medicine},

abstract = {‐arm fluoroscopy is ubiquitous in contemporary surgery, but it lacks the ability to accurately reconstruct three‐dimensional (3D) information. A major obstacle in fluoroscopic reconstruction is discerning the pose of the x‐ray image, in 3D space. Optical/magnetic trackers tend to be prohibitively expensive, intrusive and cumbersome in many applications. We present single‐image‐based fluoroscope tracking (FTRAC) with the use of an external radiographic fiducial consisting of a mathematically optimized set of ellipses, lines, and points. This is an improvement over contemporary fiducials, which use only points. The fiducial encodes six degrees of freedom in a single image by creating a unique view from any direction. A nonlinear optimizer can rapidly compute the pose of the fiducial using this image. The current embodiment has salient attributes: small dimensions ; need not be close to the anatomy of interest; and …},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{fichtinger2005g,

title = {C-arm calibration–is it really necessary?},

author = {Ameet Jain and Ryan Kon and Yu Zhou and Gabor Fichtinger},

url = {https://link.springer.com/chapter/10.1007/11566465_79},

year  = {2005},

date = {2005-01-01},

pages = {639-646},

publisher = {Springer Berlin Heidelberg},

abstract = {C-arm fluoroscopy is modelled as a perspective projection, the parameters of which are estimated through a calibration procedure. It has been universally accepted that precise intra-procedural calibration is a prerequisite for accurate quantitative C-arm fluoroscopy guidance. Calibration, however, significantly adds to system complexity, which is a major impediment to clinical practice. We challenge the status quo by questioning the assumption that precise intra-procedural calibration is really necessary. We derived theoretical bounds for the sensitivity of 3D measurements to mis-calibration. Experimental results corroborated the theory in that mis-calibration in the focal spot by as much as 50 mm still allows for tracking with an accuracy of 0.5 mm in translation and 0.65 o in rotation, and such mis-calibration does not impose any additional error on the reconstruction of small objects.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Jain2004,

title = {Brachytherapy seed reconstruction from fluoroscopic images using network flow algorithms},

author = {Ameet K. Jain and Yu Zhou and Tabish Mustufa and E. Clif Burdette and Christian Scheideler and Gregory Chirikjian and Gabor Fichtinger},

url = {http://www sciencedirect com/science/article/B6T7X-4D93P8D-YJ/2/5a75b8f5680b69fa4a2ea65491763c4b

https://labs.cs.queensu.ca/perklab/wp-content/uploads/sites/3/2024/02/Jain2004.pdf},

doi = {DOI: 10 1016/j ijrobp 2004 07 594},

issn = {0360-3016},

year  = {2004},

date = {2004-01-01},

urldate = {2004-01-01},

journal = {International Journal of Radiation Oncology*Biology*Physics},

volume = {60},

number = {Supplement 1},

pages = {S594 - S595},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Fichtinger2003,

title = {Image Registration of multiple medical imaging modalities using a multiple degree-of-freedom-encoded fiducial},

author = {Gabor Fichtinger and Ameet K. Jain and Tabish Mustufa and Keenan Wyrobek and Gregory Chirikjian and Yu Zhou and E. Clif Burdette},

year  = {2003},

date = {2003-01-01},

urldate = {2003-01-01},

number = {60/493,406},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{fichtinger0000b,

title = {Image registration of multiple medical imaging modalities using a multiple degree-of-freedom-encoded fiducial device},

author = {Gabor Fichtinger and Ameet Jain and Tabish Mustufa and Keenan Wyrobek and Greg Chirikijian and Yu Zhou and Everette C Burdette

},

url = {https://scholar.google.ca/citations?view_op=view_citation&hl=en&user=_KxkI6UAAAAJ&cstart=20&pagesize=80&citation_for_view=_KxkI6UAAAAJ:4fKUyHm3Qg0C},

keywords = {},

pubstate = {published},

tppubtype = {article}

}